LOC103033819 (LOC108426824,LOC108263419,LOC107725444)


Basic Information

Item Value
gene id LOC103033819
gene name LOC108426824,LOC108263419,LOC107725444
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13479176 ~ 13484371 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU293350
TGCAGATGTTGAGAATGATGTGGAGACGGGTCGTCACATAGTCGGAAGAGGAGGCTTCCCCAACAGCCGGGGGATAGTGGAGTGTGATGCAGCAATAATGGAAGAGTAGGGCAGCCATGCCGAGTGGCACGAAGAGTAATGGACAGAAGTCCTCACAGTTTGCTAGTTGGTGAAGGAGCTGAAGCGTTTGCACAGGAACAGGGCTTTACCATTGAAACCAACGACAGTATGCTCTCTAGCCATACACTCACTGCATATCAGGTACTCACACTGAGTGTCagtttttacacatcattttatttCGGTATCACCACACAAACAGTGTAACTTACAGTAACTTTTTGTTAAATTCCATTAAAAGGAATTCCTTGAAAATGGTCAGCATGCTAGTGGTCACGATACTATAGGTAAGCATTTACTTGAGCTAGtgtcttatctctctcttttgaaTAAATGTAGAATTGTGAGGTACACAAAGAAAGCAGTTTCAGTCTTTTTACAGTACTCAGGCCAATAGAATGTACATCACTGACATAACACTGCaaatatcataatttttaaaatgactGTAATACTTACTACCCAATCATTTTGGGTCTAAATAGTTAGATATCTGTCCAAGGCCTGGTTACTTTATAACTACACTCATTCCTGTCAgaagttcaaacaacttctgatAGATTATTTCCTGAGTAAGCCTAAACTGCAAACTGGATTACAATAggttttacattcattttgatACACAAAACTGAAAGTAGAAAAGAGTTATGATGATATATTAAATCTATAAGAGTCATGTAAGATAAAGGCAtttatcttgtgtttttttttaatggcaagGCCTCATTGCTCTGGATCTTTCAGGAAACATTACTGTTGGGGTTTCCACATCAGGAGCACCCTTCAAAGCTCCAGGGAGAGTGGGGGACTCTCCACTTCCTGGCAGTGGCCTTTATGCTGACCATACCGTAAGCTCTTTATCATAACCCTGCTATGCTGGTGCACAAACCTGCATTCAGGACAGTTCAGTCTGTTTCAGGACATAATTTCCATTCAGTTTCCTGTAAAGTTTACATAAAATTTCATAACTATTTTAGACTTGAGGAAATGTGTATATAATTCTGCTTCCTGTGTTTTAGGTTGGTGCTGCAGCAGGTTGgtattttctgtttgtttcctTAAAGGAAGAATAACTTTGCTGTTAGTCACTGAAAAGATTTATGTAAAGCCTAAAGTCTTTGGTGAAGCTGTATACAGGCATATGaactttataacatgttataagtGATGTTAGTGACCTGTTGATATTTTGTGGGTGTTATTTCTGTTAGCTACAGGTGATGGGGACAAAATCATGTGCTACTGTCCTAGCTTTCACGTCGTACAGCTAATGAGACAGGGCTCATCTCCACAAGAAGCCTGTACTTCTGTCCTCACTGATATAAGAAAGAGAATAGGAAAAGAGAAATGCTTTCAGATCGGCCTTATCGCCCTGAACATGAAGGGAGAGGTGGGTGCAGCTTCATCAGTGGAATTCCCATACACCTTCTGGAACCAAGGAATGGATTCAGTAGAGAAGCGAGTCATTTCTTATTAAGTGTATTCTGCAAGAATGTATTTTCTCAATAAAAATAACCCTTctcagaaatacatttttaaga
>XM_022684431.1
ATGGAAGATGTTGAGAATGATGTGGAGACGGGTCGTCACATAGTCGGAAGAGGAGGCTTCCCCAACAGCCGGGGGATAGTGGAGTGTGATGCAGCAATAATGGAAGGTGTGCCGGGGAGATTTGGGGCAGTAGCTGCATTGCGAGgAGTAGGGCAGCCATGCCGAGTGGCACGAAGAGTAATGGACAGAAGTCCTCACAGTTTGCTAGTTGGTGAAGGAGCTGAAGCGTTTGCACAGGAACAGGGCTTTACCATTGAAACCAACGACAGTATGCTCTCTAGCCATACACTCACTGCATATCAGGAATTCCTTGAAAATGGTCAGCATGCTAGTGGTCACGATACTATAGGCCTCATTGCTCTGGATCTTTCAGGAAACATTACTGTTGGGGTTTCCACATCAGGAGCACCCTTCAAAGCTCCAGGGAGAGTGGGGGACTCTCCACTTCCTGGCAGTGGCCTTTATGCTGACCATACCGTTGGTGCTGCAGCAGCTACAGGTGATGGGGACAAAATCATGTGCTACTGTCCTAGCTTTCACGTCGTACAGCTAATGAGACAGGGCTCATCTCCACAAGAAGCCTGTACTTCTGTCCTCACTGATATAAGAAAGAGAATAGGAAAAGAGAAATGCTTTCAGATCGGCCTTATCGCCCTGAACATGAAGGGAGAGGTGGGTGCAGCTTCATCAGTGGAATTCCCATACACCTTCTGGAACCAAGGAATGGATTCAGTAGAGAAGCGAGTCATTTCTTATTAAGTGTATTCTGCAAGAATGTATTTTCTCAATAAAAATAACCCTTctcagaaatacatttttaagaggGAAAAGACA

Function

NR:

description
PREDICTED: N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase-like

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU293350 True 1664 lncRNA 0.39 5 13480506 13484360
XM_022684431.1 False 834 mRNA 0.48 10 13479176 13484371

Neighbor

gene id symbol gene type direction distance location
pdcd2 pdcd2 coding upstream 14202 13462329 ~ 13464974 (+)
LOC103032026 ccsap coding upstream 69725 13403608 ~ 13409451 (+)
LOC103031709 acta1,act2,LOC108430668,LOC102689871 coding upstream 77537 13397781 ~ 13401639 (+)
abcb10 abcb10,LOC102798660 coding upstream 86139 13381873 ~ 13393037 (+)
trnat-ugu_90 NA coding upstream 131543 13347561 ~ 13347633 (+)
LOC103035225 rab1a,LOC103035225,LOC107601860,LOC107676578,LOC107666439,LOC105005759,LOC107725478 coding downstream 1149 13485520 ~ 13494058 (+)
sertad2 sertad2 coding downstream 57578 13541949 ~ 13594514 (+)
lgalsl lgalsl,LOC107601863,LOC107676594,LOC107666541,LOC107552938 coding downstream 123918 13608289 ~ 13613437 (+)
echs1 echs1,LOC107743519,LOC107676592,LOC107601864,LOC107666378 coding downstream 147827 13632198 ~ 13636389 (+)
fuom fuom coding downstream 155649 13640020 ~ 13645008 (+)
G216141 NA non-coding upstream 3840 13475136 ~ 13475336 (+)
G216139 NA non-coding upstream 5063 13473379 ~ 13474113 (+)
G216138 tbp,LOC107676577,LOC107725488,LOC107666436 non-coding upstream 7761 13465710 ~ 13471415 (+)
G216100 NA non-coding upstream 177129 13301385 ~ 13302047 (+)
G216073 LOC108263287,LOC108263288 non-coding upstream 241323 13205309 ~ 13237853 (+)
G216153 NA non-coding downstream 24491 13508862 ~ 13510402 (+)
G216165 NA non-coding downstream 46805 13531176 ~ 13531577 (+)
G216175 NA non-coding downstream 78116 13562487 ~ 13562709 (+)
G216278 NA non-coding downstream 231632 13716003 ~ 13716515 (+)
G216284 NA non-coding downstream 255178 13739549 ~ 13739809 (+)
trnay-gua_11 NA other upstream 163014 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 163976 13315112 ~ 13315200 (+)
LOC103038358 NA other upstream 166689 13308037 ~ 13312487 (+)
G216053 nin other upstream 375134 13091746 ~ 13104042 (+)
G215886 NA other upstream 763271 12710638 ~ 12715905 (+)
spef1 spef1 other downstream 256142 13740513 ~ 13750306 (+)
gsto1 gsto1 other downstream 857861 14342232 ~ 14347333 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 1238029 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 3520170 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 3664971 17149342 ~ 17184251 (+)

Expression


Co-expression Network