G216278


Basic Information

Item Value
gene id G216278
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13716003 ~ 13716515 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU293519
aatattttatggccaattttattgtaaaaaatacttaatatttaatatccaAAAAGCACATTGTACAGATGCTATAGCACCAACACAGAACCATATAAGAAACATCAATCTCTGCTTATctattaaataaaggttttggcCTACTTCTTCTTTCTTCCACCTCTGAAGCCTCTGACTGAGCCTTGACCGAAGCAAATTGATGAAGGCACCCTGTATGAGTAACGTGGCTTTGGCTGTTGAGAGGGTACGAGCTCTGGCTTCTCTGACTCTTGGGGCAGCGAAATGTCCATTTCCTCACAATTCTCAGTTTCTCTGTGTTGACTAACTTCTAAACTGGAGACAGCCATACAGTCTTCTCTCTGCTGAGGAGTCCTCTTCTCTTTTGTTTTGctgaacaaataaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU293519 True 404 lncRNA 0.39 2 13716003 13716515

Neighbor

gene id symbol gene type direction distance location
LOC103037925 LOC103037925,LOC108426815 coding upstream 649 13712173 ~ 13715354 (+)
fuom fuom coding upstream 70995 13640020 ~ 13645008 (+)
echs1 echs1,LOC107743519,LOC107676592,LOC107601864,LOC107666378 coding upstream 79614 13632198 ~ 13636389 (+)
lgalsl lgalsl,LOC107601863,LOC107676594,LOC107666541,LOC107552938 coding upstream 102566 13608289 ~ 13613437 (+)
sertad2 sertad2 coding upstream 121489 13541949 ~ 13594514 (+)
adam8 NA coding downstream 8077 13724592 ~ 13738969 (+)
LOC103040224 NA coding downstream 83263 13799778 ~ 13830392 (+)
LOC103036078 LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 coding downstream 150306 13866821 ~ 13870131 (+)
LOC103035759 zgc:153981,LOC103035759,LOC108426808,LOC108262675,LOC107725455,LOC107666543,LOC107601871,LOC107743612 coding downstream 153686 13870201 ~ 13875666 (+)
LOC111195973 dusp13a,LOC108426746,LOC107725429,LOC107666542,LOC108263393,LOC107743611,LOC107601810 coding downstream 165217 13881732 ~ 13887312 (+)
G216175 NA non-coding upstream 153294 13562487 ~ 13562709 (+)
G216165 NA non-coding upstream 184426 13531176 ~ 13531577 (+)
G216153 NA non-coding upstream 205601 13508862 ~ 13510402 (+)
G216143 NA non-coding upstream 235977 13479744 ~ 13480026 (+)
G216141 NA non-coding upstream 240667 13475136 ~ 13475336 (+)
G216284 NA non-coding downstream 23034 13739549 ~ 13739809 (+)
G216303 erlin1,LOC108263345,LOC108426813,LOC103476975,LOC103134047,LOC106944811 non-coding downstream 50022 13766537 ~ 13769434 (+)
LOC111195921 NA non-coding downstream 58591 13775106 ~ 13776806 (+)
G216307 NA non-coding downstream 74155 13790670 ~ 13791658 (+)
G216310 NA non-coding downstream 114314 13830829 ~ 13835233 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 231632 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 399841 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 400803 13315112 ~ 13315200 (+)
LOC103038358 NA other upstream 403516 13308037 ~ 13312487 (+)
G216053 nin other upstream 611961 13091746 ~ 13104042 (+)
spef1 spef1 other downstream 23998 13740513 ~ 13750306 (+)
gsto1 gsto1 other downstream 625717 14342232 ~ 14347333 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 1005885 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 3288026 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 3432827 17149342 ~ 17184251 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006621 znf511 coding NC_007124.7 CM002897.2 24665334 ~ 24669258 (-)
grasscarp (Ctenopharyngodon idella) CI01000012_12536242_12538668 NA coding CI01000012 null 12536076 ~ 12538728 (+)