spef1 (spef1)


Basic Information

Item Value
gene id spef1
gene name spef1
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13740513 ~ 13750306 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU293526
CGCGTGCCGTACTATGGTTGCCTAGTAACAGCTCAAACAACCTCATGTGAGGGGAACTAGCGCTGTGGATTTGGAGcaatacattttagttttaacctgttttacctttaaatactGAGAGAATAATGTCCACCATGAATAGAGATTTAGACGAGGACGCGCTGCAGGAGCTGTACGCCTGGATAGACCAAATAAACCTCTCCAGACCCAAAAGAAACATAGCGCGAGACTTCAGTGATGGAGGAAGGTTTTCTCCAAACTGAATTTCCATATACCAGAAGACACAGTGAAGAAGATAACTCTGAGCACTGCAGGCACTATTGAGCCAGTTTTGTGTGCACTCAGAATAAGACTAGAGGACAAGCAAACAGGAAAAAATCTGGAAGGCACTCAGGAACCAGTAGAATACTACAGTACTGTAAATGAAAAGGCACAGTCAGGAAACCGGCAAGTTATTGTCACTACTGACATTTCTAACAAGACAACAGCCCctgtgaaaaaaacacaaaaatccagCCCTCTCCCAGTAGCGGGACAAGACGTGGATCCAGCATTTCGCTTACTTTTGGAGGAGAAGGAACAAGCTCTGTTGGCTTTGCAGGAGACTGTAGAGATACTGCAGATAAAGGTGAACAGGTTGGAGCATCTGGTCCATCTAAAGGACCTGCGCATCGAGGACCTGACAAAACACTTGGAGCGCTACAAATCACGCCACAACAACATCCCATGATTCTGTTCAGGGAATTCATGATTCAGGGACACAGCACTATAACATTTCACCATGGCACAAAAACTCTGaggaaataaaacatgttttgtatatgtatttaaaatgtcagatttttaTAACTTAATGTTCATTGATTGATGATCGTTTGACTTGAATTTGATGTCCATGGTATCATGAGAATCTTTACTTTGATCTTAAGTGACTTCCTTACCAGCATGATCATAAATCATGTCTAAAATCATTTTCTTTGTTGTATTTATAACAGTGTGTTTTAAGTAAATAGTTGCCTTTACTGTACTTTTGATTTGTGTAGTTTGATACTTTATGATATGAAAGTTTGATATTAAAGGAGGACATCATTAATTATGCTACAGCTCACCATCATACACATGTCAAAAATTATGGGATAGCAGAATggaaattgatcatgaagtgttacctcggACGATGGCTTGGAAACGttcacacctgtataagctgtAAGGTCCTTTCTtttgagtgaggcctg
>XM_007248574.3
ATGGTTGCCTAGTAACAGCTCAAACAACCTCATGTGAGGGGAACTAGCGCTGTGGATTTGGAGcaatacattttagttttaacctgttttacctttaaatactGAGAGAATAATGTCCACCATGAATAGAGATTTAGACGAGGACGCGCTGCAGGAGCTGTACGCCTGGATAGACCAAATAAACCTCTCCAGACCCAAAAGAAACATAGCGCGAGACTTCAGTGATGGAGtTATGATTGCTGAAGTTGTGAAGCACTTCTACCCCAAACTGGTAGATCTACACAACTACACCCCCGCACACTCCACTCAGCAGAAACTGAGCAACTGGAACACTCTTAACAGGAAGGTTTTCTCCAAACTGAATTTCCATATACCAGAAGACACAGTGAAGAAGATAACTCTGAGCACTGCAGGCACTATTGAGCCAGTTTTGTGTGCACTCAGAATAAGACTAGAGGACAAGCAAACAGGAAAAAATCTGGAAGGCACTCAGGAACCAGTAGAATACTACAGTACTGTAAATGAAAAGGCACAGTCAGGAAACCGGCAAGTTATTGTCACTACTGACATTTCTAACAAGACAACAGCCCctgtgaaaaaaacacaaaaatccagCCCTCTCCCAGTAGCGGGACAAGACGTGGATCCAGCATTTCGCTTACTTTTGGAGGAGAAGGAACAAGCTCTGTTGGCTTTGCAGGAGACTGTAGAGATACTGCAGATAAAGGTGAACAGGTTGGAGCATCTGGTCCATCTAAAGGACCTGCGCATCGAGGACCTGACAAAACACTTGGAGCGCTACAAATCACGCCACAACAACATCCCATGATTCTGTTCAGGGAATTCATGATTCAGGGACACAGCACTATAACATTTCACCATGGCACAAAAACTCTGaggaaataaaacatgttttgtatatgta
>XM_022684661.1
ATGGTTGCCTAGTAACAGCTCAAACAACCTCATGTGAGGGGAACTAGCGCTGTGGATTTGGAGcaatacattttagttttaacctgttttacctttaaatactGAGAGAATAATGTCCACCATGAATAGAGATTTAGACGAGGACGCGCTGCAGGAGCTGTACGCCTGGATAGACCAAATAAACCTCTCCAGACCCAAAAGAAACATAGCGCGAGACTTCAGTGATGGAGtTATGATTGCTGAAGTTGTGAAGCACTTCTACCCCAAACTGGTAGATCTACACAACTACACCCCCGCACACTCCACTCAGCAGAAACTGAGCAACTGGAACACTCTTAACAGGAAGGTTTTCTCCAAACTGAATTTCCATATACCAGAAGACACAGTGAAGAAGATAACTCTGAGCACTGCAGGCACTATTGAGCCAGTTTTGTGTGCACTCAGAATAAGACTAGAGGACAAGCAAACAGGAAAAAATCTGGAAGGCACTCAGGAACCAGTAGAATACTACAGTACTGTAAATGAAAAGGCACAGTCAGATACTGCAGATAAAGGTGAACAGGTTGGAGCATCTGGTCCATCTAAAGGACCTGCGCATCGAGGACCTGACAAAACACTTGGAGCGCTACAAATCACGCCACAACAACATCCCATGATTCTGTTCAGGGAATTCATGATTCAGGGACACAGCACTATAACATTTCACCATGGCACAAAAACTCTGaggaaataaaacatgttttgtatatgta

Function

symbol description
spef1 Predicted to enable microtubule binding activity. Predicted to be involved in regulation of cytoskeleton organization. Predicted to be active in axoneme.

NR:

description
sperm flagellar protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU293526 True 1238 lncRNA 0.40 6 13740513 13750306
XM_007248574.3 False 925 mRNA 0.44 7 13740526 13749894
XM_022684661.1 False 752 mRNA 0.43 5 13740526 13749894

Neighbor

gene id symbol gene type direction distance location
adam8 NA coding upstream 1544 13724592 ~ 13738969 (+)
LOC103037925 LOC103037925,LOC108426815 coding upstream 25159 13712173 ~ 13715354 (+)
fuom fuom coding upstream 95505 13640020 ~ 13645008 (+)
echs1 echs1,LOC107743519,LOC107676592,LOC107601864,LOC107666378 coding upstream 104124 13632198 ~ 13636389 (+)
lgalsl lgalsl,LOC107601863,LOC107676594,LOC107666541,LOC107552938 coding upstream 127076 13608289 ~ 13613437 (+)
LOC103040224 NA coding downstream 49472 13799778 ~ 13830392 (+)
LOC103036078 LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 coding downstream 116515 13866821 ~ 13870131 (+)
LOC103035759 zgc:153981,LOC103035759,LOC108426808,LOC108262675,LOC107725455,LOC107666543,LOC107601871,LOC107743612 coding downstream 119895 13870201 ~ 13875666 (+)
LOC111195973 dusp13a,LOC108426746,LOC107725429,LOC107666542,LOC108263393,LOC107743611,LOC107601810 coding downstream 131426 13881732 ~ 13887312 (+)
dupd1 LOC108426746 coding downstream 143114 13893420 ~ 13899909 (+)
G216284 NA non-coding upstream 704 13739549 ~ 13739809 (+)
G216278 NA non-coding upstream 23998 13716003 ~ 13716515 (+)
G216175 NA non-coding upstream 177804 13562487 ~ 13562709 (+)
G216165 NA non-coding upstream 208936 13531176 ~ 13531577 (+)
G216153 NA non-coding upstream 230111 13508862 ~ 13510402 (+)
G216303 erlin1,LOC108263345,LOC108426813,LOC103476975,LOC103134047,LOC106944811 non-coding downstream 16231 13766537 ~ 13769434 (+)
LOC111195921 NA non-coding downstream 24800 13775106 ~ 13776806 (+)
G216307 NA non-coding downstream 40364 13790670 ~ 13791658 (+)
G216310 NA non-coding downstream 80523 13830829 ~ 13835233 (+)
G216339 NA non-coding downstream 312644 14062950 ~ 14063241 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 256142 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 424351 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 425313 13315112 ~ 13315200 (+)
LOC103038358 NA other upstream 428026 13308037 ~ 13312487 (+)
G216053 nin other upstream 636471 13091746 ~ 13104042 (+)
gsto1 gsto1 other downstream 591926 14342232 ~ 14347333 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 972094 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 3254235 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 3399036 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 4253947 18004253 ~ 18039352 (+)

Expression


Co-expression Network