G216307


Basic Information

Item Value
gene id G216307
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13790670 ~ 13791658 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU293553
TTTTTAAGCaaagacatcagctttaacaaATAATTGCATTTTCAATAGTATTAAACAGGTGAACAAAAAGTGCAAAGTGCAAAAAACTAAGTACAATGACTTAGAGCTTAAACTCTGTTGTCGATGAAGTTTCACAGTAACTTGAAAAACACTTCAATCAAAGTCAGGATGCTGTGACAGTTTTACATGCACCAAGTTCAAAATCAGTTACATTGAATCATCCTTTTcttcaatgttaaaataatacttCTACCACTTAATGTTCCCAAACCCCTAAATGAAGATTTAAACAGTAAAGGATTGAAAACAGAGATTTATGATGACAAGAACAACAATAACATAGAACAAAAAAAGACCTTAATGAATATTAGCTGTCTGTGAAGTCCTCCTCTGTCCTATCAAAGTGCAGAATACTGTCCTCCAGTCCAAAGTGGTCAATAAGCTGAGAGAGGCTGGCTTTCTGGCCATCTGTAGGTAATTCTGTTTGTAGTTCATACAGCACTGCTTGAGCACACCGCCTCCATTTATCTATCAGACTCTGCAGCTGGGTCAGATCGTTCTTCTTTCTGTACATTCTGACCATATTCAGCCTTCGCAGAGTCTCAGCTTTCTCCTTGACAtctttctttaatttctctTGGAGGTAAAGTAACTCACTTTGAGAGGCCTGAGAAAGGTCAGACCCACATCTCTCCACACAGTCTTTAAAGTCTTTCTTGGTCTCATTTCTGTTCACATCAATCTCAGCCTCATCCTCTGTTGGTCCAGTCTGATCTGCCTCTCCGTTTAAACTGTGTGGTAAGTCATCTTCATCCACTTTAAGCCGTTTGACCACACTCAAAGGGGATGTAAAGGAAGGCCGTGATCTTTTTAACCTGGCTTTCAGGGCAGCACT

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU293553 True 895 lncRNA 0.39 2 13790670 13791658

Neighbor

gene id symbol gene type direction distance location
adam8 NA coding upstream 51701 13724592 ~ 13738969 (+)
LOC103037925 LOC103037925,LOC108426815 coding upstream 75316 13712173 ~ 13715354 (+)
fuom fuom coding upstream 145662 13640020 ~ 13645008 (+)
echs1 echs1,LOC107743519,LOC107676592,LOC107601864,LOC107666378 coding upstream 154281 13632198 ~ 13636389 (+)
lgalsl lgalsl,LOC107601863,LOC107676594,LOC107666541,LOC107552938 coding upstream 177233 13608289 ~ 13613437 (+)
LOC103040224 NA coding downstream 8120 13799778 ~ 13830392 (+)
LOC103036078 LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 coding downstream 75163 13866821 ~ 13870131 (+)
LOC103035759 zgc:153981,LOC103035759,LOC108426808,LOC108262675,LOC107725455,LOC107666543,LOC107601871,LOC107743612 coding downstream 78543 13870201 ~ 13875666 (+)
LOC111195973 dusp13a,LOC108426746,LOC107725429,LOC107666542,LOC108263393,LOC107743611,LOC107601810 coding downstream 90074 13881732 ~ 13887312 (+)
dupd1 LOC108426746 coding downstream 101762 13893420 ~ 13899909 (+)
LOC111195921 NA non-coding upstream 13864 13775106 ~ 13776806 (+)
G216303 erlin1,LOC108263345,LOC108426813,LOC103476975,LOC103134047,LOC106944811 non-coding upstream 21236 13766537 ~ 13769434 (+)
G216284 NA non-coding upstream 50861 13739549 ~ 13739809 (+)
G216278 NA non-coding upstream 74155 13716003 ~ 13716515 (+)
G216175 NA non-coding upstream 227961 13562487 ~ 13562709 (+)
G216310 NA non-coding downstream 39171 13830829 ~ 13835233 (+)
G216339 NA non-coding downstream 271292 14062950 ~ 14063241 (+)
G216341 NA non-coding downstream 359824 14151482 ~ 14231704 (+)
G216344 NA non-coding downstream 416781 14208439 ~ 14258450 (+)
G216354 LOC108426801,LOC107726962 non-coding downstream 463749 14255407 ~ 14265349 (+)
spef1 spef1 other upstream 40364 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 306299 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 474508 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 475470 13315112 ~ 13315200 (+)
LOC103038358 NA other upstream 478183 13308037 ~ 13312487 (+)
gsto1 gsto1 other downstream 550574 14342232 ~ 14347333 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 930742 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 3212883 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 3357684 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 4212595 18004253 ~ 18039352 (+)

Expression


Co-expression Network