G216341


Basic Information

Item Value
gene id G216341
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 14151482 ~ 14231704 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU293603
cacatacacacacacacacacacacacacactcacaaaataaaacttttagaCTGGATATAATTCAATTCAGAGTGATATCTGATTTGTAAAGGGCACATCTATCTACTAAACTTGTACTTTTAGTAATCTAATAAAATGCTAGTAATTCTAGTAATCAGAACACTGTATCTAACAAAATCTTTGGCATCAATTTTTGAGgcatccaacaaaaaaaaagtcagcgaAATAAGTCCCACAGCCTTCTTATGCAAATATAAGCTAAACAACAGTGCTCCATGAAAAACAGGTGAAATATAAGCTAACACAATCAGCTCAAGTGTAAAGTAAGTGTAAGTAAAGCTAAAAATACTCTCTTTTGAGTTTCTCTTCTAATTGTGTCGACCAAAACACACTGACTAGGACAATCAGGTGCAGACAGcattaagaaatataaatatatacaatttcaataataaaaatctcCTTCTCAAAACTAAAAGAGTAAACTTCATGAACTCTTAAGATTATTTGAGAGAGGCATCAAGGAGGCCGAGCCAAAGTTCTTCaatacaaaatagaaaacaaaaaactcttcatgcaaaaaaatatatatatacctggAATTTGGATAAATTCTGGAAACCCAAcataccaaaaatatatattcaaaaatctttgtcctgtgtaatcctatgtattaaacacagtggtAAAAGATAAAGGGACCAAGagcaaaccttaaaaaaaacaaaaacagttccCGGACAAAGCAATCAGTGACACATGAACTCATCGTATATATAAAGTAAGAATAAGTGGTTTATATCAGTGTCCATGAGTTTTACACGCTTTAGAATGTGTCCTTTCATTCTAGACGTCACCACACGTCCGTGTTCCAAAAGGCAGGACAGAACCAGGACATTACAGGAGGAGCTAGTCCTCAGTTTACTGGTACCAGGGGGTCTTTCGGACCCAGCGGAGAGTGAACCCTGCGTCTGTGCGGATCTTGATGGAGGCTGCCTCTGCCTCTCTCACCGTCTCCTTCACCGACTGCATGAGGTTCTGTGCGTTGTGGACCAACATCTCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU293603 True 1070 lncRNA 0.37 2 14151482 14231704

Neighbor

gene id symbol gene type direction distance location
dupd1 LOC108426746 coding upstream 251573 13893420 ~ 13899909 (+)
LOC111195973 dusp13a,LOC108426746,LOC107725429,LOC107666542,LOC108263393,LOC107743611,LOC107601810 coding upstream 264170 13881732 ~ 13887312 (+)
LOC103035759 zgc:153981,LOC103035759,LOC108426808,LOC108262675,LOC107725455,LOC107666543,LOC107601871,LOC107743612 coding upstream 275816 13870201 ~ 13875666 (+)
LOC103036078 LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 coding upstream 281351 13866821 ~ 13870131 (+)
LOC103040224 NA coding upstream 321090 13799778 ~ 13830392 (+)
chuk chuk,LOC107726965,LOC107601877,LOC107559325,LOC107743510 coding downstream 99493 14331197 ~ 14339931 (+)
calhm3 calhm3,LOC107559321,LOC107578949,LOC102205420,LOC102305682 coding downstream 132977 14364681 ~ 14367185 (+)
LOC103038684 LOC103038684,LOC108426744 coding downstream 135600 14367304 ~ 14372827 (+)
calhm2 calhm2 coding downstream 142127 14373831 ~ 14379174 (+)
LOC103031627 LOC108426796,LOC107559326,LOC107655434,LOC107743509,LOC105911640,LOC106576688,LOC103353499 coding downstream 151008 14382712 ~ 14395068 (+)
G216339 NA non-coding upstream 88241 14062950 ~ 14063241 (+)
G216310 NA non-coding upstream 316249 13830829 ~ 13835233 (+)
G216307 NA non-coding upstream 359824 13790670 ~ 13791658 (+)
LOC111195921 NA non-coding upstream 374676 13775106 ~ 13776806 (+)
G216303 erlin1,LOC108263345,LOC108426813,LOC103476975,LOC103134047,LOC106944811 non-coding upstream 382048 13766537 ~ 13769434 (+)
G216354 LOC108426801,LOC107726962 non-coding downstream 23703 14255407 ~ 14265349 (+)
G216355 NA non-coding downstream 27639 14259343 ~ 14262684 (+)
G216408 NA non-coding downstream 119864 14351568 ~ 14351913 (+)
G216410 NA non-coding downstream 121397 14353101 ~ 14354819 (+)
G216435 NA non-coding downstream 170881 14402585 ~ 14403464 (+)
spef1 spef1 other upstream 401176 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 667111 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 835320 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 836282 13315112 ~ 13315200 (+)
LOC103038358 NA other upstream 838995 13308037 ~ 13312487 (+)
gsto1 gsto1 other downstream 110528 14342232 ~ 14347333 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 490696 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 2772837 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 2917638 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 3772549 18004253 ~ 18039352 (+)

Expression


Co-expression Network