G216354 (LOC108426801,LOC107726962)


Basic Information

Item Value
gene id G216354
gene name LOC108426801,LOC107726962
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 14255407 ~ 14265349 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU293618
CCTGGTAGGCCATTGGGATCTTTAAGCCAGCCTTTAGCTAGATTCATCTTTGACTCGATCAGTGCCAGAGCTCTCTTCATTGCCTCAGTGTCcttTTTGTTAGCCCAGGCATCTTCATCCCAGGAGGTAAGCTGGAGCACTCGTATGATTTCGTTGATGTCAGCGCTCATCTTCTCAAAGGTGTAGTTCCTGTTCTTCAGAGCCTCCTCTACTCCTGGGCTCTTGGTACATTTGGTGGTCACAAAGATTTTTATAGCTGAAGAAAGGCAAGAACAG

Function

NR:

description
PREDICTED: vinculin isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU293618 True 276 lncRNA 0.47 2 14255407 14265349

Neighbor

gene id symbol gene type direction distance location
ap3m1 LOC108426803,LOC107743512,LOC107655430,LOC107559324,LOC107726964,LOC108263184,LOC107666495 coding upstream 26777 14221906 ~ 14228630 (+)
dupd1 LOC108426746 coding upstream 355498 13893420 ~ 13899909 (+)
LOC111195973 dusp13a,LOC108426746,LOC107725429,LOC107666542,LOC108263393,LOC107743611,LOC107601810 coding upstream 368095 13881732 ~ 13887312 (+)
LOC103035759 zgc:153981,LOC103035759,LOC108426808,LOC108262675,LOC107725455,LOC107666543,LOC107601871,LOC107743612 coding upstream 379741 13870201 ~ 13875666 (+)
LOC103036078 LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 coding upstream 385276 13866821 ~ 13870131 (+)
chuk chuk,LOC107726965,LOC107601877,LOC107559325,LOC107743510 coding downstream 65848 14331197 ~ 14339931 (+)
calhm3 calhm3,LOC107559321,LOC107578949,LOC102205420,LOC102305682 coding downstream 99332 14364681 ~ 14367185 (+)
LOC103038684 LOC103038684,LOC108426744 coding downstream 101955 14367304 ~ 14372827 (+)
calhm2 calhm2 coding downstream 108482 14373831 ~ 14379174 (+)
LOC103031627 LOC108426796,LOC107559326,LOC107655434,LOC107743509,LOC105911640,LOC106576688,LOC103353499 coding downstream 117363 14382712 ~ 14395068 (+)
G216341 NA non-coding upstream 23703 14151482 ~ 14231704 (+)
G216339 NA non-coding upstream 192166 14062950 ~ 14063241 (+)
G216310 NA non-coding upstream 420174 13830829 ~ 13835233 (+)
G216307 NA non-coding upstream 463749 13790670 ~ 13791658 (+)
LOC111195921 NA non-coding upstream 478601 13775106 ~ 13776806 (+)
G216408 NA non-coding downstream 86219 14351568 ~ 14351913 (+)
G216410 NA non-coding downstream 87752 14353101 ~ 14354819 (+)
G216435 NA non-coding downstream 137236 14402585 ~ 14403464 (+)
G216437 tial1 non-coding downstream 166760 14432109 ~ 14474597 (+)
G216441 mcmbp,LOC107743503,LOC107559330,LOC107655439,LOC107726945 non-coding downstream 222410 14487759 ~ 14488523 (+)
spef1 spef1 other upstream 505101 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 771036 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 939245 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 940207 13315112 ~ 13315200 (+)
LOC103038358 NA other upstream 942920 13308037 ~ 13312487 (+)
gsto1 gsto1 other downstream 76883 14342232 ~ 14347333 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 457051 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 2739192 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 2883993 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 3738904 18004253 ~ 18039352 (+)

Expression


Co-expression Network