G216435


Basic Information

Item Value
gene id G216435
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 14402585 ~ 14403464 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU293728
ctgtcaagtctcccgttttggccgggaaactaccgtattttactcctttttcccgccgtcctcccgtattattattttcccgtaaatgtcccgtattatattaaaataaaaaaacatatattattgaggagacagggcactgaccgctctgtgtctcttaaccaatcgtggagccggttcaaggagaaagtcccgcctttcaggagaaacagccaatcagcttgcaaaggagggtcagtgtaggtaagccccccgtcgctgtgagttcaggcagctcgtcggagcagctgatgttaaaacatatctggatatacagcgatttttctaaaagaaaggtaacggtaggttAATGGAAActatgatgagatttttctgatagctgcttaaaaatactcgtctccgaaataaaacacacagattaaacctcttaaaataaaaaaaataaagtttgtgactcagtttaactagaaatgtgtagaggaccgaaatgaactgaactgatcaggagtgatcaaaagaaagaagtattaattaaaaattattaatttagtaggcccattaggactaatttttactgatagaatatatctggtccatgtccttttagtaaaagctcatgatactatttttaggtcaccaacagtcattttgcagaatttgtgcaccttttgttcaattttaaatccattaaataaataaaaaatatatcatataaaagagtgcattatgccaaaaaagacatgaacaagaacagaaacatgcctgcaggcagccacacacacaacccagagccgccacaatatacTGAAAGTCAACTAAGAATTCAGGctattaaacagtgttttccTTGGAGATGGAAAAGTACAGAAGCTGCAGAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU293728 True 880 lncRNA 0.38 1 14402585 14403464

Neighbor

gene id symbol gene type direction distance location
LOC103031627 LOC108426796,LOC107559326,LOC107655434,LOC107743509,LOC105911640,LOC106576688,LOC103353499 coding upstream 7517 14382712 ~ 14395068 (+)
calhm2 calhm2 coding upstream 23411 14373831 ~ 14379174 (+)
LOC103038684 LOC103038684,LOC108426744 coding upstream 29758 14367304 ~ 14372827 (+)
calhm3 calhm3,LOC107559321,LOC107578949,LOC102205420,LOC102305682 coding upstream 35400 14364681 ~ 14367185 (+)
chuk chuk,LOC107726965,LOC107601877,LOC107559325,LOC107743510 coding upstream 62654 14331197 ~ 14339931 (+)
atoh7 atoh7,LOC108426756,LOC107666420,LOC107726941,LOC107601814,LOC107655428,LOC107743508 coding downstream 6631 14410095 ~ 14411423 (+)
LOC103031316 LOC108426755 coding downstream 15505 14418969 ~ 14430741 (+)
bag3 bag3 coding downstream 39212 14442676 ~ 14450871 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding downstream 50552 14454016 ~ 14479060 (+)
sec23ip sec23ip,LOC107655440,LOC107666414,LOC107743502,LOC107601884 coding downstream 90389 14493853 ~ 14505846 (+)
G216410 NA non-coding upstream 47766 14353101 ~ 14354819 (+)
G216408 NA non-coding upstream 50672 14351568 ~ 14351913 (+)
G216354 LOC108426801,LOC107726962 non-coding upstream 137236 14255407 ~ 14265349 (+)
G216355 NA non-coding upstream 139901 14259343 ~ 14262684 (+)
G216344 NA non-coding upstream 144135 14208439 ~ 14258450 (+)
G216437 tial1 non-coding downstream 28645 14432109 ~ 14474597 (+)
G216441 mcmbp,LOC107743503,LOC107559330,LOC107655439,LOC107726945 non-coding downstream 84295 14487759 ~ 14488523 (+)
G216505 NA non-coding downstream 210682 14614146 ~ 14616451 (+)
G216508 NA non-coding downstream 213854 14617318 ~ 14618083 (+)
G216507 NA non-coding downstream 220196 14623660 ~ 14630795 (+)
gsto1 gsto1 other upstream 55252 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 652279 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 918214 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 1086423 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 1087385 13315112 ~ 13315200 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 318936 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 2601077 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 2745878 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 3600789 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 3908429 18311893 ~ 18317228 (+)

Expression


Co-expression Network