G216505


Basic Information

Item Value
gene id G216505
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 14614146 ~ 14616451 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU293813
acaGGAACAATTGAATACAGGGTGGTGTTGGATATGGATTGCATGACGTGGTAAAGGCCCTCTCCCTGAGgctgatatattgatatatagtCACTGCACTAGCCCGAGAGCCTGCCAGAAGGCATGAAGGTGAACGCTGTGGGCCATGAGCGAGCTTGAGCAAACCGTAACCATGAAGGCCACGGGTTCTCCAGAGACTTCAGAAATTAAGGTGCTTTACTTTTAGGTAGTTAGATACAGTATTGTCGGAcatgtaatatagtgcttctCTTAACCTAAGGCATTCGTTTAATAATATGATGCTACATCAAGTGGTATCATGTTAAAAACGCTGGCTCCTAGGTTTCCAACACATTTTCATTCCCACACAGTTATAGCCCTGTaataacatacaaaaaataaaagcaagtaaaattagaaataataattacataattgaaATATGAGACACACGCTATATtagtaatgtataatataaaaacacacacagtggtcACAGACAATATTATGAATGCATAAGAAATTAAATAGCTGATGAGGTCTGCGGTCATGATTCGATGGTACCATGTCATCATGTCTTCATCTTTAACTCCCCGCTCATCCAAGAGCTGCTTTCCCTTATTACAACTCAGGAACATTAGCCAGGCAAGTTTACCTGTTGCTCCAGCATTGTCCTGCTAtaagaacattaaaataaaaaaataaacagagaaatgaTTTTGAAGGTTATGGTAACCGTCTAATCTCCCTTCTAGAATTTCCCAAGTATTACCATTGTGTGCATGGTTAATGAGGGTTCACTGGTCTTGAAATTCAGTCACAAGGGAAGGacacattctttaaaaactaggagaaaaatggaaaaaagccCTCAAAGTTTAACTGTAGACTAGTTGGACTAACACCTGAGGTAGACAGGAAGGAACAGTGATTGTTTTAGCCACCTAATCACTTTAGAACTCTCAGCTAATTTGGGTTAAATTTACAGTTTTAGTGCTGTTTTACCTGAGCACTGGTACAATGCTAGGACTACTTGTGCTTTTCACTTTCCTTAGATGATTGTTTCACATTGgaaatgttttgtaaaataaattgtgGTATGTTTCTTGGTCCATTTTCATGCTTAACATTAATGAAGTTGCACAAACATTCACAATCAATGTGATTACAATCAGTATTATAGCAAACAGTGATGCTAGAAAGTTTGTTCTTTAGAaagattttctttaaatttgacCTAAAATTTGATTAGATCTTTAAATAAGTCTCTAAACTAGATCCAGAGAACCCAAATGTGATGCTGTATGCTGATAAAACCTGTATTTCATTTACTTCATGTTATAGAAAGTCGTAAAAAcccaatatattatttaaggtAAATTGATCATTAGGCAAATGCTGATTTTTTCTCAATTCATTTAGCTGCGTTCTTTTTGTCTAGTTGAAACACAAATGTAgacttgattatatttttaatggcaTATTTGTGAAGAACTCTGGTTCATATACTTTCTAGCAGCACTGTAGAGACTTCACAGGAATTGGTTCCCTTCTAATGTTATTTTCACTTGTATTACGCAATTAACTGTGGTGAAACATTAAGTGCAAGTCTGGACCACGATGTGCTTCAGTTTAAGGTTCTATTAAATGCTCAATTTAATGATAACCTGAGAGTTCATTCTGAGCAGTTATCTCCATCTGGACGGCCAGAAATGTATCTGAATGACAAAAGGAGAACCGGTAGTAAACGGATGCCATAATTATCAAAAAGACATAACATGTTTTTTCCCAACTTACAGAGGAAGATGTCCCTGAACTTTCTACGCTGACAGTGATACCATGATACCTACAGTAAATCCTCAATCTTCAGGACAGTAAAAAATGCCCAAACAAGAACTATGGCTTGTGCTTAAGTGAGAAATGAGTAAATGGGTGACTGAAATGAGCGACTGAAATGAGCGACAGTAAAGTTAGTGAATTACTGGAGACAACATGACGAGTGACCCACTGGCAAGATGCAGACAGATAGTCTTGCAGCCGATCCAGACTCAGTGTGTTTTGGAGCTCCCATTCATGTGGTTCCTCTTGCTGGTGTGGTGGTTCTTCTGGACCTTGGGTACTTCAGTGCTGTAGAGGCAGTCCAGGAAACCGCAGGATATCTCTGTCACCAAGGACCGGTCAGGGATGGTTTGTGCCATTCC

Function

GO: NA

KEGG:

id description
ko04977 Vitamin digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU293813 True 2201 lncRNA 0.38 2 14614146 14616451

Neighbor

gene id symbol gene type direction distance location
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 coding upstream 1578 14608175 ~ 14612568 (+)
sec23ip sec23ip,LOC107655440,LOC107666414,LOC107743502,LOC107601884 coding upstream 108300 14493853 ~ 14505846 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding upstream 135086 14454016 ~ 14479060 (+)
bag3 bag3 coding upstream 163275 14442676 ~ 14450871 (+)
LOC103031316 LOC108426755 coding upstream 183405 14418969 ~ 14430741 (+)
LOC111195974 NA coding downstream 23415 14639866 ~ 14640543 (+)
fancl fancl,LOC107585345 coding downstream 900287 15516738 ~ 15542681 (+)
LOC103023506 LOC103023506 coding downstream 1233401 15849852 ~ 15854753 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 coding downstream 1278154 15894605 ~ 16015675 (+)
LOC103022884 NA coding downstream 1400949 16017400 ~ 16022839 (+)
G216441 mcmbp,LOC107743503,LOC107559330,LOC107655439,LOC107726945 non-coding upstream 125623 14487759 ~ 14488523 (+)
G216437 tial1 non-coding upstream 139549 14432109 ~ 14474597 (+)
G216435 NA non-coding upstream 210682 14402585 ~ 14403464 (+)
G216410 NA non-coding upstream 259327 14353101 ~ 14354819 (+)
G216408 NA non-coding upstream 262233 14351568 ~ 14351913 (+)
G216508 NA non-coding downstream 867 14617318 ~ 14618083 (+)
G216507 NA non-coding downstream 7209 14623660 ~ 14630795 (+)
G216520 NA non-coding downstream 26467 14642918 ~ 14645082 (+)
G216523 NA non-coding downstream 38585 14655036 ~ 14655281 (+)
G216530 papolg non-coding downstream 78888 14695339 ~ 14695774 (+)
gsto1 gsto1 other upstream 266813 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 863840 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 1129775 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 1297984 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 1298946 13315112 ~ 13315200 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 105949 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 2388090 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 2532891 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 3387802 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 3695442 18311893 ~ 18317228 (+)

Expression


Co-expression Network