G216523


Basic Information

Item Value
gene id G216523
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 14655036 ~ 14655281 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU293832
CACGACTCCAAGCGGAGTAAAATTACTGGCGCTGGCAACACACTCCACTACAGAAAACCAGCAATAATAATGTATCAGGTACATGTACATGTATAAAATGTTTGATACATGTGTAGGACTTAATGACAGTGTACATGTGATACTAGTTTCAGATGCAGAACTCACGTGGAAAAGATCAAACGCACCCACGTGTGACAACAGCGTCAGAAACGCGTCTTATAGCGCATACTAAAACCAGGAGCTTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU293832 True 246 lncRNA 0.43 1 14655036 14655281

Neighbor

gene id symbol gene type direction distance location
LOC111195974 NA coding upstream 14493 14639866 ~ 14640543 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 coding upstream 42468 14608175 ~ 14612568 (+)
sec23ip sec23ip,LOC107655440,LOC107666414,LOC107743502,LOC107601884 coding upstream 149190 14493853 ~ 14505846 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding upstream 175976 14454016 ~ 14479060 (+)
bag3 bag3 coding upstream 204165 14442676 ~ 14450871 (+)
fancl fancl,LOC107585345 coding downstream 861457 15516738 ~ 15542681 (+)
LOC103023506 LOC103023506 coding downstream 1194571 15849852 ~ 15854753 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 coding downstream 1239324 15894605 ~ 16015675 (+)
LOC103022884 NA coding downstream 1362119 16017400 ~ 16022839 (+)
rin2 LOC108442550,LOC107673857 coding downstream 1369539 16024820 ~ 16086964 (+)
G216520 NA non-coding upstream 9954 14642918 ~ 14645082 (+)
G216507 NA non-coding upstream 24241 14623660 ~ 14630795 (+)
G216508 NA non-coding upstream 36953 14617318 ~ 14618083 (+)
G216505 NA non-coding upstream 38585 14614146 ~ 14616451 (+)
G216441 mcmbp,LOC107743503,LOC107559330,LOC107655439,LOC107726945 non-coding upstream 166513 14487759 ~ 14488523 (+)
G216530 papolg non-coding downstream 40058 14695339 ~ 14695774 (+)
G216532 papolg non-coding downstream 41647 14696928 ~ 14701738 (+)
G216541 NA non-coding downstream 89436 14744717 ~ 14745319 (+)
LOC111195976 NA non-coding downstream 236920 14892201 ~ 14911987 (+)
LOC111195977 NA non-coding downstream 256718 14911999 ~ 14923278 (+)
gsto1 gsto1 other upstream 307703 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 904730 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 1170665 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 1338874 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 1339836 13315112 ~ 13315200 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 67119 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 2349260 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 2494061 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 3348972 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 3656612 18311893 ~ 18317228 (+)

Expression


Co-expression Network