G216532 (papolg)


Basic Information

Item Value
gene id G216532
gene name papolg
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 14696928 ~ 14701738 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU293846
actctTAGCCCACAGTTTGATGGCTCTCAAAGTCAGTCGGAAGTTTTCTTTATCAGGAACCAAGTGCAGGATCTCGTCAGTCACACGGCAACCGTTTAGACTCCGAATACACCTAATGTCCAGGTTTCTAAGCAGAGAGTCTCCTCTCAGGTCCAGGTTATCAGGAATAGACTGCAGGGCAAGTCTTGCAAAAAGCAGATCAATCTCAATACCATCAAATTTAAATTTGATCACTGGTACAAACGCATCTTCCACAGCCCGAAGGTCCCTGATCTCATCGTGCTGTTTCAATTTTTCAAAGAAAGATGAGAAAAAGTCACTCCTCTCAACATGACGAGGTGCTACACAAAGAGCATCTATATCCGCACCTTTTGTGTGCACCCCCAGTCTGTAAGATCCAAAGGTAAAGATTTTGCCTCCAACATTCATTAAAGCTGAAGGAGGCAGATTCTTTGTTTCACTGATCTCTGAGATCCACTCTTTCACAAATGAATTCAGCTTTCCAAGAACAGCAAGcCTGTGATTAagctcatcctcatcctcaaaCACTCCAAAAGGTTTCATGGCCTCTATGAGCTTCTGAGTGTACAGGCGGTCAATCTCTCTGGGAAAGGCCAGGCTGATCGAGGATGTAATCCCATAATGTTTCTGAGGCTGCTGCCCGCTAAGCATATTGTTACTGGTTGCTGACATTTCTCTCATGTCCCTTCGTAGAAAATACCTAATATCTCAGACCGCAACAGTAGAAAACATAAACTCAGCCAGCAGCAGCCCCGTCCCTCTCTTTATAACAATAGTTTTACTCCAATATGGCGCCCACCGCTTCA

Function

symbol description
papolg Predicted to enable polynucleotide adenylyltransferase activity. Predicted to be involved in mRNA polyadenylation. Predicted to act upstream of or within RNA 3'-end processing; RNA polyadenylation; and mRNA processing. Predicted to be active in nucleus. Orthologous to human PAPOLG (poly(A) polymerase gamma).

NR:

description
PREDICTED: poly(A) polymerase gamma

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU293846 True 827 lncRNA 0.45 8 14696928 14701738

Neighbor

gene id symbol gene type direction distance location
LOC111195974 NA coding upstream 56385 14639866 ~ 14640543 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 coding upstream 84360 14608175 ~ 14612568 (+)
sec23ip sec23ip,LOC107655440,LOC107666414,LOC107743502,LOC107601884 coding upstream 191082 14493853 ~ 14505846 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding upstream 217868 14454016 ~ 14479060 (+)
bag3 bag3 coding upstream 246057 14442676 ~ 14450871 (+)
fancl fancl,LOC107585345 coding downstream 815000 15516738 ~ 15542681 (+)
LOC103023506 LOC103023506 coding downstream 1148114 15849852 ~ 15854753 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 coding downstream 1192867 15894605 ~ 16015675 (+)
LOC103022884 NA coding downstream 1315662 16017400 ~ 16022839 (+)
rin2 LOC108442550,LOC107673857 coding downstream 1323082 16024820 ~ 16086964 (+)
G216530 papolg non-coding upstream 1154 14695339 ~ 14695774 (+)
G216523 NA non-coding upstream 41647 14655036 ~ 14655281 (+)
G216520 NA non-coding upstream 51846 14642918 ~ 14645082 (+)
G216507 NA non-coding upstream 66133 14623660 ~ 14630795 (+)
G216508 NA non-coding upstream 78845 14617318 ~ 14618083 (+)
G216541 NA non-coding downstream 42979 14744717 ~ 14745319 (+)
LOC111195976 NA non-coding downstream 190463 14892201 ~ 14911987 (+)
LOC111195977 NA non-coding downstream 210261 14911999 ~ 14923278 (+)
G216793 NA non-coding downstream 967780 15669518 ~ 15669736 (+)
G216831 NA non-coding downstream 1213193 15914931 ~ 15923311 (+)
gsto1 gsto1 other upstream 349595 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 946622 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 1212557 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 1380766 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 1381728 13315112 ~ 13315200 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 20662 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 2302803 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 2447604 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 3302515 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 3610155 18311893 ~ 18317228 (+)

Expression


Co-expression Network