G216793


Basic Information

Item Value
gene id G216793
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 15669518 ~ 15669736 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU294127
CAAAGTTCTGGGAGCGGgtacagggtcagaggcggacGGGGCCGCGGGTGCAGGGTCAggagcagtgggtaccacatgggtggcaggcactgctggtgctggagctgaggctgtagcagcgggagctgctggtgctggagctgaggctgtagcagcgggagctgctggtgctggagctgaggctgtagcagcgggagctgctggtgctggagctgaggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294127 True 219 lncRNA 0.67 1 15669518 15669736

Neighbor

gene id symbol gene type direction distance location
fancl fancl,LOC107585345 coding upstream 126837 15516738 ~ 15542681 (+)
LOC111195974 NA coding upstream 1028975 14639866 ~ 14640543 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 coding upstream 1056950 14608175 ~ 14612568 (+)
sec23ip sec23ip,LOC107655440,LOC107666414,LOC107743502,LOC107601884 coding upstream 1163672 14493853 ~ 14505846 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding upstream 1190458 14454016 ~ 14479060 (+)
LOC103023506 LOC103023506 coding downstream 180116 15849852 ~ 15854753 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 coding downstream 224869 15894605 ~ 16015675 (+)
LOC103022884 NA coding downstream 347664 16017400 ~ 16022839 (+)
rin2 LOC108442550,LOC107673857 coding downstream 355084 16024820 ~ 16086964 (+)
LOC103022067 slc17a5,LOC107673875,LOC107585335 coding downstream 420110 16089846 ~ 16101919 (+)
LOC111195977 NA non-coding upstream 746240 14911999 ~ 14923278 (+)
LOC111195976 NA non-coding upstream 757531 14892201 ~ 14911987 (+)
G216541 NA non-coding upstream 924199 14744717 ~ 14745319 (+)
G216532 papolg non-coding upstream 967780 14696928 ~ 14701738 (+)
G216530 papolg non-coding upstream 973744 14695339 ~ 14695774 (+)
G216831 NA non-coding downstream 245195 15914931 ~ 15923311 (+)
G216893 NA non-coding downstream 438993 16108729 ~ 16109441 (+)
G216894 ddx43,LOC107693529,LOC107588708,LOC105911636 non-coding downstream 448123 16117859 ~ 16128583 (+)
G216910 NA non-coding downstream 585752 16255488 ~ 16323301 (+)
LOC103031925 NA non-coding downstream 785601 16455337 ~ 16469869 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 889205 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 1322185 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 1919212 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 2185147 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 2353356 13316075 ~ 13316162 (+)
borcs7 borcs7 other downstream 1334805 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 1479606 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 2334517 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 2642157 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 3073470 18743206 ~ 18744327 (+)

Expression


Co-expression Network