G216831


Basic Information

Item Value
gene id G216831
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 15914931 ~ 15923311 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU294169
ttttcagtttctcctccgtggttgaaaggcagctgtctctcacacagcagaactgagggcggggctgcgctcatgcagcggctctctatataaatgaataggatgcgctgtgttggtgccgcgccatttgcgtagcgcgctgcgctatttgcgtagcgcgcgcgggagggatcgtcgatcctctttttgacttcgatactcgagaccatgacctcatttcgattcgatttcgataaaatatcgagatcgtgacacccctaAAAATTACAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294169 True 271 lncRNA 0.51 2 15914931 15923311

Neighbor

gene id symbol gene type direction distance location
LOC103023506 LOC103023506 coding upstream 60178 15849852 ~ 15854753 (+)
fancl fancl,LOC107585345 coding upstream 372250 15516738 ~ 15542681 (+)
LOC111195974 NA coding upstream 1274388 14639866 ~ 14640543 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 coding upstream 1302363 14608175 ~ 14612568 (+)
sec23ip sec23ip,LOC107655440,LOC107666414,LOC107743502,LOC107601884 coding upstream 1409085 14493853 ~ 14505846 (+)
LOC103022884 NA coding downstream 94089 16017400 ~ 16022839 (+)
rin2 LOC108442550,LOC107673857 coding downstream 101509 16024820 ~ 16086964 (+)
LOC103022067 slc17a5,LOC107673875,LOC107585335 coding downstream 166535 16089846 ~ 16101919 (+)
LOC103021740 LOC108442579,LOC108263602,LOC108258313,LOC108441988,LOC105023253,LOC107716315,LOC107693767 coding downstream 179917 16103228 ~ 16108566 (+)
mb21d1 NA coding downstream 186954 16110265 ~ 16116490 (+)
G216793 NA non-coding upstream 245195 15669518 ~ 15669736 (+)
LOC111195977 NA non-coding upstream 991653 14911999 ~ 14923278 (+)
LOC111195976 NA non-coding upstream 1002944 14892201 ~ 14911987 (+)
G216541 NA non-coding upstream 1169612 14744717 ~ 14745319 (+)
G216532 papolg non-coding upstream 1213193 14696928 ~ 14701738 (+)
G216893 NA non-coding downstream 185418 16108729 ~ 16109441 (+)
G216894 ddx43,LOC107693529,LOC107588708,LOC105911636 non-coding downstream 194548 16117859 ~ 16128583 (+)
G216910 NA non-coding downstream 332177 16255488 ~ 16323301 (+)
LOC103031925 NA non-coding downstream 532026 16455337 ~ 16469869 (+)
G216953 NA non-coding downstream 562591 16485902 ~ 16487538 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 1134618 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 1567598 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 2164625 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 2430560 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 2598769 13316075 ~ 13316162 (+)
borcs7 borcs7 other downstream 1081230 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 1226031 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 2080942 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 2388582 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 2819895 18743206 ~ 18744327 (+)

Expression


Co-expression Network