G216893


Basic Information

Item Value
gene id G216893
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 16108729 ~ 16109441 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU294240
CCATCTAGCCATGCAGGGTCTGCAGCAGTCAGAGAGAATGGGTCATTCTACCAATGCCACCCATGCAACATCATGTCTTCTTTTGAATATATTCCACATTTATCTGTAAGCGATCTTACTGAAACGTGAAAGTGTTAAGGAACCACAGCAGCTCAAACCAGAAAGTAGCAGACCACAAAAGTTAGAGATGAGTCACAGTGTTGAAATGCATATGTGTCACCAACAGTCTACTAACTCAATAACTGCAGATAACTCTGACATTTACATGAGCACAGAAACTGTGCCACAAGCTTCTTGGCATGTGTTTCCATGTCTGAGCAGCTGCATGCAAGAATTACATCACAAAGTACAATGCGAAGTGGTGTAAACCACACCACCACTGAAAGTGTTCTACCATGCTTCTCTTAAACAGTTTTTGACCTGTGGAAGCTGGGGGATGAATTTAGAATGGGATGTTATGAAAGCTCCTGTAGATGTCCAGATGTATTCAAATTTCCATTTCTTTACTTTCTTATTCTCGATAGTTGTGACACTACACGGTCAATTATTAACTGTTCTCTAAATTTCCAGAAATAAACAACTGAAGTAAACATACAGGCCTGGGAACTGAATTTGAGACCCAGATTAGATGACCTGGTATGTGGGTATTCGAATCCActgcctggcaaaaaaaaaaaaggtcacacactgtTGGACATTGTTGGACTGCCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294240 True 713 lncRNA 0.41 1 16108729 16109441

Neighbor

gene id symbol gene type direction distance location
LOC103021740 LOC108442579,LOC108263602,LOC108258313,LOC108441988,LOC105023253,LOC107716315,LOC107693767 coding upstream 163 16103228 ~ 16108566 (+)
LOC103022067 slc17a5,LOC107673875,LOC107585335 coding upstream 6810 16089846 ~ 16101919 (+)
rin2 LOC108442550,LOC107673857 coding upstream 21765 16024820 ~ 16086964 (+)
LOC103022884 NA coding upstream 85890 16017400 ~ 16022839 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 coding upstream 93054 15894605 ~ 16015675 (+)
mb21d1 NA coding downstream 824 16110265 ~ 16116490 (+)
LOC103032358 asrgl1,LOC103032358,LOC105911569,LOC107695955,LOC107585330,LOC108442615,LOC107673965 coding downstream 330156 16439597 ~ 16452704 (+)
b3gat2 b3gat2 coding downstream 414676 16524117 ~ 16551646 (+)
LOC103035008 slc2a15a,LOC103035008,LOC108442702,LOC107716293,LOC107673883,LOC108262874,LOC107585370,LOC107708408,LOC107696166 coding downstream 743263 16852704 ~ 16879760 (+)
fgf8_1 fgf8,fgf8a,LOC107673879,LOC107716294,LOC107696243,LOC108442712,LOC107585369 coding downstream 807260 16916701 ~ 16922940 (+)
G216831 NA non-coding upstream 185418 15914931 ~ 15923311 (+)
G216793 NA non-coding upstream 438993 15669518 ~ 15669736 (+)
LOC111195977 NA non-coding upstream 1185451 14911999 ~ 14923278 (+)
LOC111195976 NA non-coding upstream 1196742 14892201 ~ 14911987 (+)
G216541 NA non-coding upstream 1363410 14744717 ~ 14745319 (+)
G216894 ddx43,LOC107693529,LOC107588708,LOC105911636 non-coding downstream 8418 16117859 ~ 16128583 (+)
G216910 NA non-coding downstream 146047 16255488 ~ 16323301 (+)
LOC103031925 NA non-coding downstream 345896 16455337 ~ 16469869 (+)
G216953 NA non-coding downstream 376461 16485902 ~ 16487538 (+)
G216941 smap1,LOC107588664,LOC107694205,LOC107585328 non-coding downstream 451411 16560852 ~ 16719481 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 1328416 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 1761396 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 2358423 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 2624358 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 2792567 13316075 ~ 13316162 (+)
borcs7 borcs7 other downstream 895100 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 1039901 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 1894812 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 2202452 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 2633765 18743206 ~ 18744327 (+)

Expression


Co-expression Network