G216941 (smap1,LOC107588664,LOC107694205,LOC107585328)


Basic Information

Item Value
gene id G216941
gene name smap1,LOC107588664,LOC107694205,LOC107585328
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 16560852 ~ 16719481 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU294299
GTGCAGGTTGCTGAGGGACAGAGCTAGACccatacagagagagaatagagtCCTTGGAAAGGGGTTTCTTGGTGGAGTCTTCGGctttgttgctgctgctgttgctgccgCTGTTCTCGCTAAATAAGTCCAGGTCTGCCTGTGCGGGCGCACCTCCAGCGGTCCCCTGGGCTCCTGGTACTGCTGTTCCCACAGCAGAGCTTGAAGCTGTGCTCCCAGTGGCCTTCCTGGAACTGGCctGGTTTGTGTTGGTGCTCGATGGCAGAGGGTTGGACACCATTGGTCCAAAGATGTCCAGGTCATCACTTATAGGAGCTGCGCTTCCAGATCCCGCCCCGCTGCTGGCTGAGCTGACTGCAGGAGCATCCAGGCCTAGCAGGTCGATGGCAGGTTCCACACTCTTCTTAGGACTGGCTCTTGAGTCTATCTGAAGGTCCTCCCGCTTCTTGTCGAAGGCTGAGGGCTTGATCCCTTTATctgtttccttttctctcttcttctcttctttctgcttctccctctccttAAAAGAGTCATTGACTGCATTTTTGTCATAGTACTTCTTCTTCTCGTACTTGTCCCTGATGAAGAACTCCACGGCTTGGTCGGTTTGTGGCCGTCTGAAGTTGTCTGGGAGATGGGCTTCGTACAGCTGTCGGGCCTTAGTGTTTCCCATGCTCTGCACGCTCTGAATTTGCTCGGGGGTCCATTGGTCCAGGTTGACTGATTTGACTCGGGATATGTGCACTCCTAGGTTCCGGTGAATTCCAGCACACCTGATACAGATGAACACACCAAGGTTCCAGGAGGCCCATCGAGGTCCTTTCGCCTCGCAGTCGGCGCAGTATTTGTTGTCCTCCTCACGGAGCATTTTGGACAGGATGGCCTGATGCTGCTCATTCAGTTTCTGAGCTTTCTCCCGCTCCGAGCGCGTCGTCATCTCGGCCCTGCTGTCTGTACCGCTTCCTCACACAACTGTCAGCCTTTTCCCGGATCTCTCTGTCTAGTTAGTCGCTGTTAAATAGAAGACCATCCCCTGAAAACACGCCCGTAGCGACCGCGCACAGACAAGCCTCGCGCTGCTCACTCCCCGGCTCACACAAACCAGCAAGCCCA
>TU294300
GTGCAGGTTGCTGAGGGACAGAGCTAGACccatacagagagagaatagagtCCTTGGAAAGGGGTTTCTTGGTGGAGTCTTCGGctttgttgctgctgctgttgctgccgCTGTTCTCGCTAAATAAGTCCAGGTCTGCCTGTGCGGGCGCACCTCCAGCGGTCCCCTGGGCTCCTGGTACTGCTGTTCCCACAGCAGAGCTTGAAGCTGTGCTCCCAGTGGCCTTCCTGGAACTGGCctGGTTTGTGTTGGTGCTCGATGGCAGAGGGTTGGACACCATTGGTCCAAAGATGTCCAGGTCATCACTTATAGGAGCTGCGCTTCCAGATCCCGCCCCGCTGCTGGCTGAGCTGACTGCAGGAGCATCCAGGCCTAGCAGGTCGATGGCAGGTTCCACACTCTTCTTAGGACTGGCTCTTGAGTCTATCTGAAGGTCCTCCCGCTTCTTGTCGAAGGCTGAGGGCTTGATCCCTTTATctgtttccttttctctcttcttctcttctttctgcttctccctctccttCTCCAGTTTGTTTTTCTCGGCTGCTTGCGAGGAGGGGGAGGATGCCGAGGGCATAGCAGCATCAGAAGACTTAAAAGAGTCATTGACTGCATTTTTGTCATAGTACTTCTTCTTCTCGTACTTGTCCCTGATGAAGAACTCCACGGCTTGGTCGGTTTGTGGCCGTCTGAAGTTGTCTGGGAGATGGGCTTCGTACAGCTGTCGGGCCTTAGTGTTTCCCATGCTCTGCACGCTCTGAATTTGCTCGGGGGTCCATTGGTCCAGGTTGACTGATTTGACTCGGGATATGTGCACTCCTAGGTTCCGGTGAATTCCAGCACACCTGATACAGATGAACACACCAAGGTTCCAGGAGGCCCATCGAGGTCCTTTCGCCTCGCAGTCGGCGCAGTATTTGTTGTCCTCCTCACGGAGCATTTTGGACAGGATGGCCTGATGCTGCTCATTCAGTTTCTGAGCTTTCTCCCGCTCCGAGCGCGTCGTCATCTCGGCCCTGCTGTCTGTACCGCTTCCTCACACAACTGTCAGCCTTTTCCCGGATCTCTCTGTCTAGTTAGTCGCTGTTAAATAGAAGACCATCCCCTGAAAACACGCCCGTAGCGACCGCGCACAGACAAGCCTCGCGCTGCTCACTCCCCGGCTCACACAAACCAGCAAGCCCA
>TU294303
GTGCAGGTTGCTGAGGGACAGAGCTAGACccatacagagagagaatagagtCCTTGGAAAGGGGTTTCTTGGTGGAGTCTTCGGctttgttgctgctgctgttgctgccgCTGTTCTCGCTAAATAAGTCCAGGTCTGCCTGTGCGGGCGCACCTCCAGCGGTCCCCTGGGCTCCTGGTACTGCTGTTCCCACAGCAGAGCTTGAAGCTGTGCTCCCAGTGGCCTTCCTGGAACTGGCctGGTTTGTGTTGGTGCTCGATGGCAGAGGGTTGGACACCATTGGTCCAAAGATGTCCAGGTCATCACTTATAGGAGCTGCGCTTCCAGATCCCGCCCCGCTGCTGGCTGAGCTGACTGCAGGAGCATCCAGGCCTAGCAGGTCGATGGCAGGTTCCACACTCTTCTTAGGACTGGCTCTTGAGTCTATCTGAAGGTCCTCCCGCTTCTTGTCGAAGGCTGAGGGCTTGATCCCTTTATctgtttccttttctctcttcttctcttctttctgcttctccctctcAAAAGAGTCATTGACTGCATTTTTGTCATAGTACTTCTTCTTCTCGTACTTGTCCCTGATGAAGAACTCCACGGCTTGGTCGGTTTGTGGCCGTCTGAAGTTGTCTGGGAGATGGGCTTCGTACAGCTGTCGGGCCTTAGTGTTTCCCATGCTCTGCACGCTCTGAATTTGCTCGGGGGTCCATTGGTCCAGGTTGACTGATTTGACTCGGGATATGTGCACTCCTAGGTTCCGGTGAATTCCAGCACACCTGATACAGATGAACACACCAAGGTTCCAGGAGGCCCATCGAGGTCCTTTCGCCTCGCAGTCGGCGCAGTATTTGTTGTCCTCCTCACGGAGCATTTTGGACAGGATGGCCTGATGCTGCTCATTCAGTTTCTGAGCTTTCTCCCGCTCCGAGCGCGTCGTCATCTCGGCCCTGCTGTCTGTACCGCTTCCTCACACAACTGTCAGCCTTTTCCCGGATCTCTCTGTCTAGTTAGTCGCTGTTAAATAGAAGACCATCCCCTGAAAACACGCCCGTAGCGACCGCGCACAGACAAGCCTCGCGCTGCTCACTCCCCGGCTCACACAAACCAGCAAGCCCA

Function

symbol description
smap1 Predicted to enable GTPase activator activity. Predicted to be involved in regulation of clathrin-dependent endocytosis. Is expressed in central nervous system and lens. Orthologous to human SMAP1 (small ArfGAP 1).

NR:

description
PREDICTED: stromal membrane-associated protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294299 False 1116 lncRNA 0.55 8 16560852 16719481
TU294300 True 1188 lncRNA 0.55 9 16560852 16719481
TU294303 False 1113 lncRNA 0.55 8 16560852 16719481

Neighbor

gene id symbol gene type direction distance location
b3gat2 b3gat2 coding upstream 9206 16524117 ~ 16551646 (+)
LOC103032358 asrgl1,LOC103032358,LOC105911569,LOC107695955,LOC107585330,LOC108442615,LOC107673965 coding upstream 108148 16439597 ~ 16452704 (+)
mb21d1 NA coding upstream 444362 16110265 ~ 16116490 (+)
LOC103021740 LOC108442579,LOC108263602,LOC108258313,LOC108441988,LOC105023253,LOC107716315,LOC107693767 coding upstream 452286 16103228 ~ 16108566 (+)
LOC103022067 slc17a5,LOC107673875,LOC107585335 coding upstream 458933 16089846 ~ 16101919 (+)
LOC103035008 slc2a15a,LOC103035008,LOC108442702,LOC107716293,LOC107673883,LOC108262874,LOC107585370,LOC107708408,LOC107696166 coding downstream 133223 16852704 ~ 16879760 (+)
fgf8_1 fgf8,fgf8a,LOC107673879,LOC107716294,LOC107696243,LOC108442712,LOC107585369 coding downstream 197220 16916701 ~ 16922940 (+)
fbxw4 fbxw4,LOC107716323,LOC107707737,LOC107694796,LOC107673945,LOC107588663 coding downstream 211617 16931098 ~ 16967406 (+)
wbp1l wbp1l coding downstream 262572 16982053 ~ 16994408 (+)
cnnm2 cnnm2,cnnm2a,LOC107673921,LOC107716327,LOC107585325,LOC107588659 coding downstream 291074 17010555 ~ 17029001 (+)
G216953 NA non-coding upstream 73314 16485902 ~ 16487538 (+)
LOC103031925 NA non-coding upstream 90983 16455337 ~ 16469869 (+)
G216910 NA non-coding upstream 237551 16255488 ~ 16323301 (+)
G216894 ddx43,LOC107693529,LOC107588708,LOC105911636 non-coding upstream 432269 16117859 ~ 16128583 (+)
G216893 NA non-coding upstream 451411 16108729 ~ 16109441 (+)
LOC111196035 NA non-coding downstream 163544 16883025 ~ 16898394 (+)
G217109 NA non-coding downstream 290093 17009574 ~ 17009798 (+)
G217122 pcgf6 non-coding downstream 338849 17058330 ~ 17060581 (+)
G217140 NA non-coding downstream 544649 17264130 ~ 17264431 (+)
G217222 NA non-coding downstream 675558 17395039 ~ 17395249 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 1780539 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 2213519 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 2810546 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 3076481 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 3244690 13316075 ~ 13316162 (+)
borcs7 borcs7 other downstream 285060 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 429861 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 1284772 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 1592412 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 2023725 18743206 ~ 18744327 (+)

Expression


Co-expression Network