G217109


Basic Information

Item Value
gene id G217109
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17009574 ~ 17009798 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU294502
CAACGTTTTCTCAAGTGCccaaaaataagagatcacttgatgatgagtttctctgattttaccaaattgaaaacctctggaatataatcaagaggaagatgaatgatcacaagccatcaaaccaaactgaacttgaATGTttttggcataaagttatccaaaagcagtgtaagactggtggagaagaacattccaaaatgcataaaaactgtgattaaaatccag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294502 True 225 lncRNA 0.35 1 17009574 17009798

Neighbor

gene id symbol gene type direction distance location
wbp1l wbp1l coding upstream 15166 16982053 ~ 16994408 (+)
fbxw4 fbxw4,LOC107716323,LOC107707737,LOC107694796,LOC107673945,LOC107588663 coding upstream 42168 16931098 ~ 16967406 (+)
fgf8_1 fgf8,fgf8a,LOC107673879,LOC107716294,LOC107696243,LOC108442712,LOC107585369 coding upstream 86634 16916701 ~ 16922940 (+)
LOC103035008 slc2a15a,LOC103035008,LOC108442702,LOC107716293,LOC107673883,LOC108262874,LOC107585370,LOC107708408,LOC107696166 coding upstream 129814 16852704 ~ 16879760 (+)
b3gat2 b3gat2 coding upstream 457928 16524117 ~ 16551646 (+)
cnnm2 cnnm2,cnnm2a,LOC107673921,LOC107716327,LOC107585325,LOC107588659 coding downstream 757 17010555 ~ 17029001 (+)
LOC103037825 ina coding downstream 42182 17051980 ~ 17056045 (+)
polr1c polr1c coding downstream 54098 17063896 ~ 17067641 (+)
ldb1 ldb1,ldb1a,LOC108442788,LOC108444470,LOC107585322,LOC107673939,LOC107707596 coding downstream 67241 17077039 ~ 17107707 (+)
LOC103040130 NA coding downstream 99465 17109263 ~ 17130106 (+)
LOC111196035 NA non-coding upstream 111180 16883025 ~ 16898394 (+)
G216941 smap1,LOC107588664,LOC107694205,LOC107585328 non-coding upstream 290093 16560852 ~ 16719481 (+)
G216953 NA non-coding upstream 522036 16485902 ~ 16487538 (+)
LOC103031925 NA non-coding upstream 539705 16455337 ~ 16469869 (+)
G216910 NA non-coding upstream 686273 16255488 ~ 16323301 (+)
G217122 pcgf6 non-coding downstream 48532 17058330 ~ 17060581 (+)
G217140 NA non-coding downstream 254332 17264130 ~ 17264431 (+)
G217222 NA non-coding downstream 385241 17395039 ~ 17395249 (+)
G217313 NA non-coding downstream 766968 17776766 ~ 17777086 (+)
G217359 NA non-coding downstream 1090156 18099954 ~ 18161772 (+)
borcs7 borcs7 other upstream 2037 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 2229261 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 2662241 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 3259268 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 3525203 13479176 ~ 13484371 (+)
LOC111195981 tacc2 other downstream 139544 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 994455 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 1302095 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 1733408 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 1827546 18837344 ~ 18847028 (+)

Expression


Co-expression Network