G217122 (pcgf6)


Basic Information

Item Value
gene id G217122
gene name pcgf6
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17058330 ~ 17060581 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU294516
TGTGCTTCTCACTTCTCTCAGAGACTGGCGCTGCTGTAGGATATGCTCCCCACAAACAACATCCACCTGCAAATTAGGACTTAATTCCATCTTTCTTCTGATAAAGAGTTCCACATGTCGAATGGTGGCTTCACCTGATACACGCACATACTTTCTCTCCAGGGGcttaTAATTTTCAATGCCATTCTCAGCcCCAACAAACTCCAGCATCAGCGATACATCCAGTTCTGGAGGAATAGTAAAAACAGACTGCGGCATCATGTCTTTCTGTTTCAGAGGCTTTGTTGGAAGAATGGATGGCACTGCCACTGGTTTTGGCATTACCAGTCCTCTGTTTTTGTAAAATGCACACATTCTTTGCCTC

Function

symbol description
pcgf6 Predicted to enable metal ion binding activity. Predicted to be involved in histone H2A-K119 monoubiquitination and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be part of PRC1 complex. Is expressed in gonad; nervous system; and pharyngeal arch. Orthologous to human PCGF6 (polycomb group ring finger 6).

NR:

description
PREDICTED: polycomb group RING finger protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294516 True 364 lncRNA 0.45 5 17058330 17060581

Neighbor

gene id symbol gene type direction distance location
LOC103037825 ina coding upstream 2285 17051980 ~ 17056045 (+)
cnnm2 cnnm2,cnnm2a,LOC107673921,LOC107716327,LOC107585325,LOC107588659 coding upstream 29329 17010555 ~ 17029001 (+)
wbp1l wbp1l coding upstream 63922 16982053 ~ 16994408 (+)
fbxw4 fbxw4,LOC107716323,LOC107707737,LOC107694796,LOC107673945,LOC107588663 coding upstream 90924 16931098 ~ 16967406 (+)
fgf8_1 fgf8,fgf8a,LOC107673879,LOC107716294,LOC107696243,LOC108442712,LOC107585369 coding upstream 135390 16916701 ~ 16922940 (+)
polr1c polr1c coding downstream 3315 17063896 ~ 17067641 (+)
ldb1 ldb1,ldb1a,LOC108442788,LOC108444470,LOC107585322,LOC107673939,LOC107707596 coding downstream 16458 17077039 ~ 17107707 (+)
LOC103040130 NA coding downstream 48682 17109263 ~ 17130106 (+)
nsmce4a nsmce4a,LOC108262367,LOC107716332,LOC107688307,LOC107707575,LOC107585317 coding downstream 80090 17140671 ~ 17145888 (+)
LOC103040431 NA coding downstream 126560 17187141 ~ 17261572 (+)
G217109 NA non-coding upstream 48532 17009574 ~ 17009798 (+)
LOC111196035 NA non-coding upstream 159936 16883025 ~ 16898394 (+)
G216941 smap1,LOC107588664,LOC107694205,LOC107585328 non-coding upstream 338849 16560852 ~ 16719481 (+)
G216953 NA non-coding upstream 570792 16485902 ~ 16487538 (+)
LOC103031925 NA non-coding upstream 588461 16455337 ~ 16469869 (+)
G217140 NA non-coding downstream 203549 17264130 ~ 17264431 (+)
G217222 NA non-coding downstream 334458 17395039 ~ 17395249 (+)
G217313 NA non-coding downstream 716185 17776766 ~ 17777086 (+)
G217359 NA non-coding downstream 1039373 18099954 ~ 18161772 (+)
G217362 NA non-coding downstream 1056621 18117202 ~ 18124261 (+)
borcs7 borcs7 other upstream 50793 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 2278017 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 2710997 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 3308024 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 3573959 13479176 ~ 13484371 (+)
LOC111195981 tacc2 other downstream 88761 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 943672 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 1251312 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 1682625 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 1776763 18837344 ~ 18847028 (+)

Expression


Co-expression Network