G217222


Basic Information

Item Value
gene id G217222
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17395039 ~ 17395249 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU294658
caaattgttggtgcacgtcttgctggcgcatctgtaaccaagacagcaagtctttgtgatgtatcaagagccacaatatccagggtaatgtcagcataccaccaagaaggaccaaccacatccaacaggattaactgtggacgcaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaacttaaaacca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294658 True 211 lncRNA 0.46 1 17395039 17395249

Neighbor

gene id symbol gene type direction distance location
LOC103040431 NA coding upstream 133467 17187141 ~ 17261572 (+)
nsmce4a nsmce4a,LOC108262367,LOC107716332,LOC107688307,LOC107707575,LOC107585317 coding upstream 249151 17140671 ~ 17145888 (+)
LOC103040130 NA coding upstream 264933 17109263 ~ 17130106 (+)
ldb1 ldb1,ldb1a,LOC108442788,LOC108444470,LOC107585322,LOC107673939,LOC107707596 coding upstream 287332 17077039 ~ 17107707 (+)
polr1c polr1c coding upstream 327398 17063896 ~ 17067641 (+)
unc5b unc5b,LOC107588651,LOC107707543,LOC107688303 coding downstream 85162 17480411 ~ 17575186 (+)
LOC103043107 LOC108442891,LOC108263542 coding downstream 183949 17579198 ~ 17632034 (+)
parg LOC107683745 coding downstream 238527 17633776 ~ 17672861 (+)
LOC103043721 ogdhl,LOC108442924,LOC107683740,LOC108263326,LOC107707496 coding downstream 281905 17677154 ~ 17700496 (+)
LOC103045248 lrit1a,LOC108442250,LOC107585312,LOC107673966,LOC107716298,LOC107707479,LOC107588643 coding downstream 360719 17755968 ~ 17760796 (+)
G217140 NA non-coding upstream 130608 17264130 ~ 17264431 (+)
G217122 pcgf6 non-coding upstream 334458 17058330 ~ 17060581 (+)
G217109 NA non-coding upstream 385241 17009574 ~ 17009798 (+)
LOC111196035 NA non-coding upstream 496645 16883025 ~ 16898394 (+)
G216941 smap1,LOC107588664,LOC107694205,LOC107585328 non-coding upstream 675558 16560852 ~ 16719481 (+)
G217313 NA non-coding downstream 381517 17776766 ~ 17777086 (+)
G217359 NA non-coding downstream 704705 18099954 ~ 18161772 (+)
G217362 NA non-coding downstream 721953 18117202 ~ 18124261 (+)
G217368 NA non-coding downstream 756952 18152201 ~ 18154348 (+)
G217369 NA non-coding downstream 759156 18154405 ~ 18158027 (+)
LOC111195981 tacc2 other upstream 210788 17149342 ~ 17184251 (+)
borcs7 borcs7 other upstream 387502 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 2614726 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 3047706 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 3644733 13740513 ~ 13750306 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 609004 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 916644 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 1347957 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 1442095 18837344 ~ 18847028 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 1765404 19160653 ~ 19216989 (+)

Expression


Co-expression Network