G217313


Basic Information

Item Value
gene id G217313
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17776766 ~ 17777086 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU294793
cacctgtgtcctgtctgtaaccccgccccctcgtcatccaagcccaggtgtttctcactctcctcctgtatttaagcccctctgtttgaatgttcagtgtcgagtcttttgtatcgtTTGTATcgtttgtatcctttgtatcttTTGTATCCTTGCCGATCGTTGTATCCTTGCCGTTCGTTTGAATCCTCGTCTTCCGTGCACTCTGGTTTTGTGTTCCTAGTTCTAGTTTATCCTtgccttgttttctttgtagtttTGTGCGTTACCcgagttttgtttactgttttatttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294793 True 295 lncRNA 0.44 2 17776766 17777086

Neighbor

gene id symbol gene type direction distance location
LOC103045557 LOC108442258 coding upstream 9975 17761326 ~ 17766791 (+)
LOC103045248 lrit1a,LOC108442250,LOC107585312,LOC107673966,LOC107716298,LOC107707479,LOC107588643 coding upstream 15970 17755968 ~ 17760796 (+)
LOC103043721 ogdhl,LOC108442924,LOC107683740,LOC108263326,LOC107707496 coding upstream 76270 17677154 ~ 17700496 (+)
parg LOC107683745 coding upstream 103905 17633776 ~ 17672861 (+)
LOC103043107 LOC108442891,LOC108263542 coding upstream 144732 17579198 ~ 17632034 (+)
LOC103046358 LOC108442959,LOC108262760 coding downstream 23655 17800741 ~ 17809379 (+)
cuedc2 cuedc2 coding downstream 365509 18142595 ~ 18149799 (+)
LOC103023375 LOC108443064,LOC108263659,LOC105910124 coding downstream 425252 18202338 ~ 18212333 (+)
LOC103023691 spock2,LOC108443083,LOC107668819,LOC108262742,LOC107673954 coding downstream 456123 18233209 ~ 18287507 (+)
LOC103025593 LOC108443100,LOC108263458 coding downstream 545504 18322590 ~ 18337821 (+)
G217222 NA non-coding upstream 381517 17395039 ~ 17395249 (+)
G217140 NA non-coding upstream 512335 17264130 ~ 17264431 (+)
G217122 pcgf6 non-coding upstream 716185 17058330 ~ 17060581 (+)
G217109 NA non-coding upstream 766968 17009574 ~ 17009798 (+)
LOC111196035 NA non-coding upstream 878372 16883025 ~ 16898394 (+)
G217359 NA non-coding downstream 322868 18099954 ~ 18161772 (+)
G217362 NA non-coding downstream 340116 18117202 ~ 18124261 (+)
G217368 NA non-coding downstream 375115 18152201 ~ 18154348 (+)
G217369 NA non-coding downstream 377319 18154405 ~ 18158027 (+)
G217361 hif1an non-coding downstream 386296 18163382 ~ 18167900 (+)
LOC111195981 tacc2 other upstream 592515 17149342 ~ 17184251 (+)
borcs7 borcs7 other upstream 769229 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 2996453 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 3429433 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 4026460 13740513 ~ 13750306 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 227167 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 534807 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 966120 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 1060258 18837344 ~ 18847028 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 1383567 19160653 ~ 19216989 (+)

Expression


Co-expression Network