Item | Value |
---|---|
gene id | pax2 |
gene name | pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 |
gene type | misc |
species | mexican tetra (Astyanax mexicanus) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_035921.1 |
NCBI id | CM008324.1 |
chromosome length | 46505145 |
location | 18004253 ~ 18039352 (+) |
genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
symbol | description |
---|---|
pax2a | Enables sequence-specific DNA binding activity. Involved in nervous system development. Acts upstream of or within several processes, including animal organ development; cilium assembly; and nervous system development. Located in nucleus. Is expressed in several structures, including immature eye; mesoderm; nervous system; neural keel; and pronephros. Used to study coloboma. Human ortholog(s) of this gene implicated in focal segmental glomerulosclerosis 7 and renal coloboma syndrome. Orthologous to human PAX2 (paired box 2). |
pax2 | Enables DNA-binding transcription factor activity and cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including kidney development; negative regulation of cellular metabolic process; and positive regulation of epithelial cell proliferation. Located in centriolar satellite and nucleoplasm. Implicated in focal segmental glomerulosclerosis 7 and renal coloboma syndrome. Biomarker of nephroblastoma. |
description |
---|
paired box protein Pax-2 isoform X1 |
id | name | namespace |
---|---|---|
GO:0001708 | cell fate specification | biological_process |
GO:0035775 | pronephric glomerulus morphogenesis | biological_process |
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0060113 | inner ear receptor cell differentiation | biological_process |
GO:0072114 | pronephros morphogenesis | biological_process |
GO:0021588 | cerebellum formation | biological_process |
GO:0009880 | embryonic pattern specification | biological_process |
GO:0043049 | otic placode formation | biological_process |
GO:0048596 | embryonic camera-type eye morphogenesis | biological_process |
GO:0030878 | thyroid gland development | biological_process |
GO:0007422 | peripheral nervous system development | biological_process |
GO:0030901 | midbrain development | biological_process |
GO:0030917 | midbrain-hindbrain boundary development | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0003677 | DNA binding | molecular_function |
id | description |
---|---|
K15608 | PAX2; paired box protein 2 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU294837 | False | 862 | lncRNA | 0.38 | 2 | 18030626 | 18039352 |
XM_007249491.3 | True | 4720 | mRNA | 0.45 | 12 | 18004253 | 18039347 |
XM_007249492.3 | False | 4675 | mRNA | 0.45 | 11 | 18004253 | 18039347 |
XM_007249493.3 | False | 4507 | mRNA | 0.45 | 11 | 18004256 | 18039347 |
XM_007249494.3 | False | 4462 | mRNA | 0.45 | 10 | 18004256 | 18039347 |
XM_007249495.3 | False | 4445 | mRNA | 0.45 | 10 | 18004254 | 18039347 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC103046358 | LOC108442959,LOC108262760 | coding | upstream | 194874 | 17800741 ~ 17809379 (+) |
LOC103045557 | LOC108442258 | coding | upstream | 237462 | 17761326 ~ 17766791 (+) |
LOC103045248 | lrit1a,LOC108442250,LOC107585312,LOC107673966,LOC107716298,LOC107707479,LOC107588643 | coding | upstream | 243457 | 17755968 ~ 17760796 (+) |
LOC103043721 | ogdhl,LOC108442924,LOC107683740,LOC108263326,LOC107707496 | coding | upstream | 303757 | 17677154 ~ 17700496 (+) |
parg | LOC107683745 | coding | upstream | 331392 | 17633776 ~ 17672861 (+) |
cuedc2 | cuedc2 | coding | downstream | 103243 | 18142595 ~ 18149799 (+) |
LOC103023375 | LOC108443064,LOC108263659,LOC105910124 | coding | downstream | 162986 | 18202338 ~ 18212333 (+) |
LOC103023691 | spock2,LOC108443083,LOC107668819,LOC108262742,LOC107673954 | coding | downstream | 193857 | 18233209 ~ 18287507 (+) |
LOC103025593 | LOC108443100,LOC108263458 | coding | downstream | 283238 | 18322590 ~ 18337821 (+) |
rps24 | LOC102780737 | coding | downstream | 310388 | 18349740 ~ 18353030 (+) |
G217313 | NA | non-coding | upstream | 227167 | 17776766 ~ 17777086 (+) |
G217222 | NA | non-coding | upstream | 609004 | 17395039 ~ 17395249 (+) |
G217140 | NA | non-coding | upstream | 739822 | 17264130 ~ 17264431 (+) |
G217122 | pcgf6 | non-coding | upstream | 943672 | 17058330 ~ 17060581 (+) |
G217109 | NA | non-coding | upstream | 994455 | 17009574 ~ 17009798 (+) |
G217359 | NA | non-coding | downstream | 60602 | 18099954 ~ 18161772 (+) |
G217362 | NA | non-coding | downstream | 77850 | 18117202 ~ 18124261 (+) |
G217368 | NA | non-coding | downstream | 112849 | 18152201 ~ 18154348 (+) |
G217369 | NA | non-coding | downstream | 115053 | 18154405 ~ 18158027 (+) |
G217361 | hif1an | non-coding | downstream | 124030 | 18163382 ~ 18167900 (+) |
LOC111195981 | tacc2 | other | upstream | 820002 | 17149342 ~ 17184251 (+) |
borcs7 | borcs7 | other | upstream | 996716 | 17004541 ~ 17007537 (+) |
bcl11a | bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 | other | upstream | 3223940 | 14722400 ~ 14780313 (+) |
gsto1 | gsto1 | other | upstream | 3656920 | 14342232 ~ 14347333 (+) |
spef1 | spef1 | other | upstream | 4253947 | 13740513 ~ 13750306 (+) |
eif4ebp2 | eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 | other | downstream | 272541 | 18311893 ~ 18317228 (+) |
LOC103030769 | LOC103030769 | other | downstream | 703854 | 18743206 ~ 18744327 (+) |
cxcl12 | cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 | other | downstream | 797992 | 18837344 ~ 18847028 (+) |
LOC103040131 | ptpn20,LOC108443401,LOC102205930,LOC108262844 | other | downstream | 1121301 | 19160653 ~ 19216989 (+) |
rrp12 | rrp12,LOC106529656 | other | downstream | 1284554 | 19323906 ~ 19345404 (+) |