G217361 (hif1an)


Basic Information

Item Value
gene id G217361
gene name hif1an
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18163382 ~ 18167900 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU294856
AATACATCCCAAACACGGGATTATcatacatttttactttacCACTAAGCAAACTACttaatatataaaactaaatgTTATTGTTTGAAAGATTTAATACCTGGCTCTGTCTGTCACATGGATGATGAACAGGGTAGGGGTAGAGACACTCAAACTGGTCCGGAGGAAAAAGAATACACCTCTTGTGACCTTTTATTTGTGCAAAAAAGTTCTGCTGCTCATCATAGTGTGCTGGTGTCACATTTCCTTCCATGCCTATGAGCAGCAGATTAGATGTTAGCTGTCCCCAGTTTCTTTTGGTTTGCTGTTTGTTGATCCAGTTCCAGTTGAATCCCAAGAAATCCACAACAATTTTCCGCCCAACTGTGTCGTTTAGGGTTTGCTGCAAGTAtactCTCTCTTTTCCATCCAGCTCCTGTGTTTGATGCATCTTTTCTACAAATTCGGAAAACTTCATCTCTATCCGGCGTGATTTTGGCACAAAGTTCTCAAAGTTTGACATTTTCTTCTCATCGTAATATAAGAATTTATGGTTTTCAGCAATGTACACAGAGAAGTCCCCATTGCCGATGTTCTCTTGCAAGTAATTTATGTCCCACTTGAGTGCTGGATACACCAAGTTGGTGTCTGTTAATACA

Function

symbol description
hif1an Predicted to enable several functions, including 2-oxoglutarate-dependent dioxygenase activity; ankyrin repeat binding activity; and transition metal ion binding activity. Acts upstream of or within negative regulation of vasculature development and regulation of vascular endothelial growth factor receptor signaling pathway. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including alar plate midbrain region; central nervous system; immature eye; midbrain hindbrain boundary neural rod; and midbrain neural keel. Orthologous to human HIF1AN (hypoxia inducible factor 1 subunit alpha inhibitor).

NR:

description
hypoxia-inducible factor 1-alpha inhibitor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294856 True 638 lncRNA 0.39 3 18163382 18167900

Neighbor

gene id symbol gene type direction distance location
cuedc2 cuedc2 coding upstream 13583 18142595 ~ 18149799 (+)
LOC103046358 LOC108442959,LOC108262760 coding upstream 354003 17800741 ~ 17809379 (+)
LOC103045557 LOC108442258 coding upstream 396591 17761326 ~ 17766791 (+)
LOC103045248 lrit1a,LOC108442250,LOC107585312,LOC107673966,LOC107716298,LOC107707479,LOC107588643 coding upstream 402586 17755968 ~ 17760796 (+)
LOC103043721 ogdhl,LOC108442924,LOC107683740,LOC108263326,LOC107707496 coding upstream 462886 17677154 ~ 17700496 (+)
LOC103023375 LOC108443064,LOC108263659,LOC105910124 coding downstream 34438 18202338 ~ 18212333 (+)
LOC103023691 spock2,LOC108443083,LOC107668819,LOC108262742,LOC107673954 coding downstream 65309 18233209 ~ 18287507 (+)
LOC103025593 LOC108443100,LOC108263458 coding downstream 154690 18322590 ~ 18337821 (+)
rps24 LOC102780737 coding downstream 181840 18349740 ~ 18353030 (+)
LOC103028339 LOC108443181 coding downstream 208748 18376648 ~ 18634603 (+)
G217359 NA non-coding upstream 1610 18099954 ~ 18161772 (+)
G217369 NA non-coding upstream 5355 18154405 ~ 18158027 (+)
G217368 NA non-coding upstream 9034 18152201 ~ 18154348 (+)
G217362 NA non-coding upstream 39121 18117202 ~ 18124261 (+)
G217313 NA non-coding upstream 386296 17776766 ~ 17777086 (+)
G217364 NA non-coding downstream 19690 18187590 ~ 18220569 (+)
G217420 NA non-coding downstream 255930 18423830 ~ 18424763 (+)
G217431 zcchc24,LOC107564348,LOC106608383 non-coding downstream 514062 18681962 ~ 18689693 (+)
G217433 NA non-coding downstream 520472 18688372 ~ 18695794 (+)
G217435 NA non-coding downstream 530093 18697993 ~ 18699151 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 124030 18004253 ~ 18039352 (+)
LOC111195981 tacc2 other upstream 979131 17149342 ~ 17184251 (+)
borcs7 borcs7 other upstream 1155845 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 3383069 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 3816049 14342232 ~ 14347333 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 143993 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 575306 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 669444 18837344 ~ 18847028 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 992753 19160653 ~ 19216989 (+)
rrp12 rrp12,LOC106529656 other downstream 1156006 19323906 ~ 19345404 (+)

Expression


Co-expression Network