G217364


Basic Information

Item Value
gene id G217364
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18187590 ~ 18220569 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU294861
aatttatttcaattattattaaGGATTCATAAACTCACTGCACAACTCACAAACCTTTTTCTACTATAGACAACTTGCTTCATTTATGTGAAAGCCTTTGAAATGGTGCCTGTTTTAAAGCTCTCACCACAGGTCaagtttactgaaataaagttaaaatactgagaaacagtacaaatgtaaatatgttttaggTGTAAAATATCAGTAGTTAATGCAAGAAAgcatacagtatttatacacagCATGTGTACAATGAGAAACAGACCAGAACAAGTAACAGGCCAGTAACCTGCTCTTCaattgttttcagtgttttctataGACCAGGGAGCTTCATTTTAGTCATTCTTAACCAGATCACAACTGAAAGTCCAGCTGTAAGGATCAacatgatatatgatatgataaagCAAAGTTTTTAGgtggaaacacaaaaaaatcacttacaCTTTGGTCCATAGCAAactaaacacattatttaacatttacatgCACACCATTTTTTTGTAGCAGGGgtggaaaaatattttactctaATATGAGTACTTGCTCAATTAAAAATAGACATATGGAGAAACAAacctaagagagagagagcaaaacagTAACAACATTTTAAGTATACTCAATTAACAcaaaaaagtaaacattttaaccaaaaattaaaagtttcttTTATTCAGTAGTTTATGTTGTGGTGGTGTGTGATGCAGTGATGCAATGGCTAATTGATGGTACTAGCCCTCACACAGACAAATCATAGCCaagcaaaatatatttttacactgataTGAATTTGGTTGGATGTTCTAGTCATATGAACAAAGTTCAAATGCACAAGAACTTGTCTGATTGGCAAAATACAAAGGAAAATTCTTACAGCCactaaaactttaaattagGGGTAAATGAAAAAACTCAAGAGTGTCTCGTAAATGAAATTCAAGTACAAATCTTCTAAAATATCTAAAGATATTTTAACAAGCTAAAGTTATTTATCAAATATTTGGTCAACCCTAATTTTAACACGATTATCTCCTGGAAGGTTTTGGATATACAGCCTCTTTCATTTAAACAGGTTAAATAAGATCACTACATTCCAGTTTATATGAATTTAAATGAAGTTTTCAGGATTATAGGCACTAAAGCCATCTATAGTACTTTAAAGTGCAAATCACATTTAATTTtggcttaaataaataaacacattgagAAAATCTTAAGTAACTTCTAGAGTGATTCAAAGCTTGCCAATCTGTAACGCTTGTTAAAAGAATGGCTTTAATGAACAGCGGACAGTGCTTGATAGTTCAGTGAGataaaatttgtaatttttgtcTGTGGGAGGTAACCATGGGTGTGCActaaagagacaaagagataaAGCCATGCAAAAAGGTAACTGTGTTGGTAACTTGCTTTGAAGTATCATGATGTATCAGTAAATTCTCAAATCAGACATCAAAGCCAAATTCCAGATCCAGATTAGaagaatgtttaaaatgttgctCTATCCTGATGTGTTGGGAGCTGGtactgaacaaaaaatataaactatcTGGGGGGCTTTTAGGGCTGGTTTGAAATCCACTGGTTAAGATGATGGTGCAGAGCTAAACCTTCCAGTTGGATCGTGATCCTCAcatcaacctttttttttcctttatttttttatacaatgtgCAAACTTATTCAGATGACTTTGACTCACTGTGAAACCAGGGGGCAAGGACAATCCTGAGAATTGTGTATGACAGAAAAACCTCATCAAATATTACATTTGAATGTGCACAAAGTACAAAATTCAGGGGCACTTATAAATATGGcatgttaagtttttttttttttctttaaaaaaaaaataaagtttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294861 True 1884 lncRNA 0.32 2 18187590 18220569

Neighbor

gene id symbol gene type direction distance location
cuedc2 cuedc2 coding upstream 37791 18142595 ~ 18149799 (+)
LOC103046358 LOC108442959,LOC108262760 coding upstream 378211 17800741 ~ 17809379 (+)
LOC103045557 LOC108442258 coding upstream 420799 17761326 ~ 17766791 (+)
LOC103045248 lrit1a,LOC108442250,LOC107585312,LOC107673966,LOC107716298,LOC107707479,LOC107588643 coding upstream 426794 17755968 ~ 17760796 (+)
LOC103043721 ogdhl,LOC108442924,LOC107683740,LOC108263326,LOC107707496 coding upstream 487094 17677154 ~ 17700496 (+)
LOC103023691 spock2,LOC108443083,LOC107668819,LOC108262742,LOC107673954 coding downstream 12640 18233209 ~ 18287507 (+)
LOC103025593 LOC108443100,LOC108263458 coding downstream 102021 18322590 ~ 18337821 (+)
rps24 LOC102780737 coding downstream 129171 18349740 ~ 18353030 (+)
LOC103028339 LOC108443181 coding downstream 156079 18376648 ~ 18634603 (+)
LOC103029282 ppifa,LOC108442288,LOC107588732,LOC107668776,LOC108263515,LOC107564349,LOC107673899,LOC105909881 coding downstream 415499 18636068 ~ 18640875 (+)
G217361 hif1an non-coding upstream 19690 18163382 ~ 18167900 (+)
G217359 NA non-coding upstream 25818 18099954 ~ 18161772 (+)
G217369 NA non-coding upstream 29563 18154405 ~ 18158027 (+)
G217368 NA non-coding upstream 33242 18152201 ~ 18154348 (+)
G217362 NA non-coding upstream 63329 18117202 ~ 18124261 (+)
G217420 NA non-coding downstream 203261 18423830 ~ 18424763 (+)
G217431 zcchc24,LOC107564348,LOC106608383 non-coding downstream 461393 18681962 ~ 18689693 (+)
G217433 NA non-coding downstream 467803 18688372 ~ 18695794 (+)
G217435 NA non-coding downstream 477424 18697993 ~ 18699151 (+)
G217438 NA non-coding downstream 493482 18714051 ~ 18714310 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 148238 18004253 ~ 18039352 (+)
LOC111195981 tacc2 other upstream 1003339 17149342 ~ 17184251 (+)
borcs7 borcs7 other upstream 1180053 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 3407277 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 3840257 14342232 ~ 14347333 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 91324 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 522637 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 616775 18837344 ~ 18847028 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 940084 19160653 ~ 19216989 (+)
rrp12 rrp12,LOC106529656 other downstream 1103337 19323906 ~ 19345404 (+)

Expression


Co-expression Network