G217369


Basic Information

Item Value
gene id G217369
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18154405 ~ 18158027 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU294870
CACAACATTTCAGAGTTCGACAAACGAGCACCAACAGAACCAACCTGAGGGGGAACAAGACCATCTGTGTCCTGTACACAACTTTCCTGAGAAGTTACCTTAGATACAGCAACAGGCACTGCAGTCTCACAAAGCGAAGACACTTTAACTTGGTCCTTACTCATGACCTCCGGAACCTCTCTGTCCACATAGGACTTTAACATGTTGATGTGACAGACTCGTGATTTACGATTCCGATCTGGAGTTTTTACCACATAATCAGTCTCACTTAGCTTCTGCTGAATTACATATGGGCCAGAAAATTTAGCAGACAGTGAAGACCCAAGCAATGGCAACAAAACAAGGACTTTATCCCCTGGTTGAAACTGGCGTGGGACAGTTTTCCTATCATAATGCTGTTTCATTTTTCCCTGAACTGAGCACAGAGCAGTTTTTGCAGCTTGACAAGCAGCATGTAAATGCTCTCTAAACTTGCTCACATAGTCTAAGACATTAGTTTCTTCCTTTTTGTCTGAAAGGAAGGACTCTTTCAGCAACTTCAAAGGACCTCTCACTGAGTGACCAAAAACAAGCTGTGCTGGGGAAAAACCCAGAGACTCCTGGACTGCTTCTCGAGTAGCAAAAAGTGCAAAGGGTACCCCATCATCCCACTGTCGACCTGAATCTAGGCAGTACTTGCGTAACATGGACTTTAAAGTCTGATGGAATCGCTCAAGTGCGCCCTGACTCTCAGGATGGTATGAACTGGACACAACaCCTGAGAAAACACCCTGGACATGAAATTAGTGCCCTGATCGGTCTGAATTATTTTAGGCAATCCAAAGATTGAAAAGAACTTTGTCAATGCCTTCAACACAGAGGGTGCACTTATTTTCCGAAGTGGAAATGCTTCTGGAAAGCGAGTTGCAGCACACATAACTGTTAGTAAAAACTGATTACCAGACTTAGTACGAGGTAACGGACCAACACAATCTACTAGAACTCTCTCAAACGGTTCTCCAACTGCTGGGATGGGATGCAGTGGAGCCAAAGGAATCACCTGATTTGGCTTGCCTGTTCTTTGGCAAACATCACAAGACCTACAAAAAACTGTCACATCCTGCTTTAATGCTGGCCAAAAAAAATGCCTTAGCACTCGAGCATAGGTTTTTGCTATGCCTTGATGACCAGACCATGGATGATCATGTGCTAGCTGCAACACCTGAGGCCTGTAGTCAGAAGGTACAACTATTTGGCACACATCATCAACACCTTCATTCTCACGTGGAGTCCACTTTCTCATCAACACACCgtgttcaaaataaaagccaacCTTTTTGTCTACAAGGACATTGGTAGATGACAAAGACAAATACTTAGCCAAACTAGGGTCAGTTTGCTGAGCTTTTATCAAGCACTCTCGACTTACTGAAGCATCACTTCCAGCAGACCTCTGGACATCAGAATACTCACTAACTGGAATCAATTTAACTGAAAAGTCAATCAGTGGGTTATCTCTAGCTAAAAACGTATCAGAAAGGGAAGGTGCATCAGAATACTTTTGAGACTGAGCACGAGTAACAGCACACATGGGAAGATTTTCAATTGCAGAACAATGTTCCACTGACCCATTAGGACTAGGCTTATCTATAACCTCTGGCACAGGAACCACTCTGCCACCGGCGATATCATTACCTAGAATTAGCTGTACCCCCTTTACAGGCAATGCTGAACAGACtcccactttaaaatgaccagAAACCaaatcagacttcaaataaaccTCATGCAATGGAACTTTCATGTAGGACATGTCAATGCCTTGGCATAGTGCATGTGACCCACAAAAAGAAAGCTCTGGCTGAGAAGGCAAAACATCAGCAAGCATCAAGGTTAATGCTGCCCCAGTGTCACGCAAAATCTGTACTGGACTCTGCTTATCTCCCAAAGAGACAAATCCTTTACTAACAAAAGGCCTGTAATCATCACTTACCAAATCACCTACACTGTAATCCAACACAGGGTCAACAGTTTTTACAAAAGCCACTCCTTTCCTGACTTCACCTGAAACAGCTTCACGTTCTTGTTTACGTTTCAATGCTGGACAATCAACAGCTATATGCCCTGGCTTATGGCAATAGTAACACTCAGCTTGGTCACGTGACAAGCGAGTAGGAAAGTTGGACTGACGAGGCTGAGGCTGTTCTGCAGCAGCCTTCACCTCTCCTGACTTAGACTTCACTGGCTTAAAAACACTTCGGTGTGTAAGCACATACTCATCAGCTAGAACAGCAGCTTCTGAAACAGACTTTACATGGCGCTCATTTAGATAAACAACAACACTCTCAGGTAAACAAGTCTTAAACTCCTCCAAAAGGATTAACTCCCGTAGTTTATCATAATCGTCCACTTTACTAGCAGCACACCACTTATCAAAAAGCTGAAGCTTTTCCCTAGAAAACTCAACAAATGTCTGTGAAGAACCCTTTCTACAATTACGAAAGCGCTGCCTATAGGCTTCAGGTACAAGCTCATAAGCCCTCAACACTGCAGTCTTAACTATATCATAATCCAAGCTATCATTTAATGACAAAGAGGATAAAACATCCTGAGCTTTCCCAGTCAACTTACATTGTAGGAGTAGTGTCCACAAATCTTTAGGCCAACTTAAAGCTAAAGCAATGcgctcaaaaacacaaaaatatgtgtCTACCTCAGTTTCTCTAAAAGGCGGAACTAAAGCAATAAGCTTACTCACATTAAGAGATGAAGAGTGAGATTCAGAAGATGTAGAAGGACATGGAGTTTGGCTAGAGGCCTCTATTGCCTCAGAAGCAGCTAGCTCTACAACTGCTGGAGAAGAAACCTTCTGTACAACTGGGTTTGAAGTGGAGCGCTTCACCCCAAGCTCCAGTTCTCGCAAGCGAACCTCACGCTCAACGTCTAACTCCATACGCCGAATTGCaagctctttctccatctctaacTTTTGACGCTTCTCCTCAGACTCAAACTGCAGCCGTGCAACCCTCACCTTTACTAAAGCTTTCTCCCGACTATCTGACCCAGTTTCCAAAGGAGAAAAAGGATCAAAACGTGGAAGTGTAGCACGTGTTCCAGGTAACGTTTGGACAATCTCCTGCACAACAGGAGGCTCAACTGGTTGAGAAGCAGGAGTAACTGCAACTGGCTTCTCAGAAATAGGTGAAGAAGCAGAAGTAGCACTCGCTACTGTAGTATCACCTTCTACACTAGATGCTAAAACACCCAAGTCTACCAAACCTTCCATCACAATCCTTTTTAGTTCCCTTTTAACCAAAGATTTAGAGACTGAAATACCAAAGTGCTGCGCTATCTCCAACAAAACATCCTTCCTACAGACATTAAGTAAATCTACTGAAGGGGCTTGAACAAATGCAGCTAGACTACCAGACAAAGCCATCCCAACAAACTACAgctaccaaacaaacaaaacctaCTGCTACCACCAAACAGTTAGTACTAGTccactcaccacacactctgTTCCCAAAATTATCCCGGAGCCCCCAATATGTTACAACCCAAGTTGGCTCGTTGTTAAAAATGGTTGCAACAAAGGGAACAGAAGGGAAGTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294870 True 3598 lncRNA 0.44 2 18154405 18158027

Neighbor

gene id symbol gene type direction distance location
cuedc2 cuedc2 coding upstream 4606 18142595 ~ 18149799 (+)
LOC103046358 LOC108442959,LOC108262760 coding upstream 345026 17800741 ~ 17809379 (+)
LOC103045557 LOC108442258 coding upstream 387614 17761326 ~ 17766791 (+)
LOC103045248 lrit1a,LOC108442250,LOC107585312,LOC107673966,LOC107716298,LOC107707479,LOC107588643 coding upstream 393609 17755968 ~ 17760796 (+)
LOC103043721 ogdhl,LOC108442924,LOC107683740,LOC108263326,LOC107707496 coding upstream 453909 17677154 ~ 17700496 (+)
LOC103023375 LOC108443064,LOC108263659,LOC105910124 coding downstream 44311 18202338 ~ 18212333 (+)
LOC103023691 spock2,LOC108443083,LOC107668819,LOC108262742,LOC107673954 coding downstream 75182 18233209 ~ 18287507 (+)
LOC103025593 LOC108443100,LOC108263458 coding downstream 164563 18322590 ~ 18337821 (+)
rps24 LOC102780737 coding downstream 191713 18349740 ~ 18353030 (+)
LOC103028339 LOC108443181 coding downstream 218621 18376648 ~ 18634603 (+)
G217368 NA non-coding upstream 57 18152201 ~ 18154348 (+)
G217362 NA non-coding upstream 30144 18117202 ~ 18124261 (+)
G217313 NA non-coding upstream 377319 17776766 ~ 17777086 (+)
G217222 NA non-coding upstream 759156 17395039 ~ 17395249 (+)
G217140 NA non-coding upstream 889974 17264130 ~ 17264431 (+)
G217361 hif1an non-coding downstream 5355 18163382 ~ 18167900 (+)
G217364 NA non-coding downstream 29563 18187590 ~ 18220569 (+)
G217420 NA non-coding downstream 265803 18423830 ~ 18424763 (+)
G217431 zcchc24,LOC107564348,LOC106608383 non-coding downstream 523935 18681962 ~ 18689693 (+)
G217433 NA non-coding downstream 530345 18688372 ~ 18695794 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 115053 18004253 ~ 18039352 (+)
LOC111195981 tacc2 other upstream 970154 17149342 ~ 17184251 (+)
borcs7 borcs7 other upstream 1146868 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 3374092 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 3807072 14342232 ~ 14347333 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 153866 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 585179 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 679317 18837344 ~ 18847028 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 1002626 19160653 ~ 19216989 (+)
rrp12 rrp12,LOC106529656 other downstream 1165879 19323906 ~ 19345404 (+)

Expression


Co-expression Network