G217431 (zcchc24,LOC107564348,LOC106608383)


Basic Information

Item Value
gene id G217431
gene name zcchc24,LOC107564348,LOC106608383
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18681962 ~ 18689693 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU294961
CTGAGGGCAGTCTTTGATGTAATGTCCCTTATTGAAGCAGAGATGGCATAGGTAGTTTGGTGGAGGTCTCTTGCTGGGCTTGCGTGGCTCAGAGGACAGGGAGAGGTCAGAAAAGTGGTCCGTTAGAGAGTTCAACCCATCCACTATGTTGTTCAGAGAGCCGTACGGGGAGACGCTTTTGTATAAGCCATTATTCAAGGCCTGTTCCTCTGAAGCTGAAAGAAGTTGCTGAGATAGTTggaagtgagagaggagctgagGTCGGCTGCGGGAGCCTTGCTGTAGTTCAGGTCCGGATGGGAAGCGTTGGGCTCGGGTCGGAAGGCATCGAAAGCGCTGGTCTGATGGGTGTCTTGTAAGGAGAGATAGACCCAGTTCAGCAGCTGTGCGGGCTGGTACACTGAGGTACTGCTGTCTATGGCAGACAACAAGCTCATCTTTTTGCGGATtgactgtctctccctctcccgcAGTCACTTTCACACAACTCTCAACTCTTAACTCTCAACCGCGACCTGTTCGAAGTTCACTGAACGCGCCGTCCGCTTTTTCACACCCCACAAGCGGCGAGTTCTCGCTCTTCTTCTTCCCGCTCCGACCCTGTTCCTCTCCTGGGAACCCCGTCCCAGGTTTAAGATAACGCCCGAGTTATTCCTCTAACATGacattacaacaaaaaaaaacttttcgcCCGCTGCCGGCGGCCCGTT

Function

symbol description
zcchc24 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZCCHC24 (zinc finger CCHC-type containing 24).

NR:

description
PREDICTED: zinc finger CCHC domain-containing protein 24 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294961 True 710 lncRNA 0.53 2 18681962 18689693

Neighbor

gene id symbol gene type direction distance location
LOC103029282 ppifa,LOC108442288,LOC107588732,LOC107668776,LOC108263515,LOC107564349,LOC107673899,LOC105909881 coding upstream 41087 18636068 ~ 18640875 (+)
LOC103028339 LOC108443181 coding upstream 47359 18376648 ~ 18634603 (+)
rps24 LOC102780737 coding upstream 328932 18349740 ~ 18353030 (+)
LOC103025593 LOC108443100,LOC108263458 coding upstream 344141 18322590 ~ 18337821 (+)
LOC103023691 spock2,LOC108443083,LOC107668819,LOC108262742,LOC107673954 coding upstream 394455 18233209 ~ 18287507 (+)
c25h10orf10 LOC103031081 coding downstream 41904 18731597 ~ 18732521 (+)
ercc6 ercc6 coding downstream 220253 18909946 ~ 18938453 (+)
drgx drgx,LOC107673892,LOC107548637,LOC107588616,LOC107708289 coding downstream 252555 18942248 ~ 18948011 (+)
LOC107197625 vstm4 coding downstream 285366 18975059 ~ 18990050 (+)
LOC103032870 NA coding downstream 327614 19017307 ~ 19019746 (+)
G217420 NA non-coding upstream 257199 18423830 ~ 18424763 (+)
G217364 NA non-coding upstream 461393 18187590 ~ 18220569 (+)
G217361 hif1an non-coding upstream 514062 18163382 ~ 18167900 (+)
G217369 NA non-coding upstream 523935 18154405 ~ 18158027 (+)
G217368 NA non-coding upstream 527614 18152201 ~ 18154348 (+)
G217435 NA non-coding downstream 8300 18697993 ~ 18699151 (+)
G217438 NA non-coding downstream 24358 18714051 ~ 18714310 (+)
G217439 NA non-coding downstream 28612 18718305 ~ 18773411 (+)
G217442 NA non-coding downstream 57699 18747392 ~ 18750080 (+)
G217472 NA non-coding downstream 249332 18939025 ~ 18939903 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 364734 18311893 ~ 18317228 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 642610 18004253 ~ 18039352 (+)
LOC111195981 tacc2 other upstream 1497711 17149342 ~ 17184251 (+)
borcs7 borcs7 other upstream 1674425 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 3901649 14722400 ~ 14780313 (+)
LOC103030769 LOC103030769 other downstream 53513 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 147651 18837344 ~ 18847028 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 470960 19160653 ~ 19216989 (+)
rrp12 rrp12,LOC106529656 other downstream 634213 19323906 ~ 19345404 (+)
G217874 nkx2-3 other downstream 1330721 20020414 ~ 20074343 (+)

Expression


Co-expression Network