G217442


Basic Information

Item Value
gene id G217442
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18747392 ~ 18750080 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU294986
tctttcAGCAAACACATTGAAGCTATGCTGAGTTTAACATGGGTTTCAGTACTTTAAGTCTTCtgacaatttttctttttttacccaTCCTGACAGATTATGTGATCACAGCCACGAATATTCGGGAGAAATGTGAGTGCATCAACGTGACCAACAATGTGAGATGGAGAGCAGTCAAAGGCTTTGAAGTGAAAGAGCCGGAGGCTCTTTGCAATAAGGTTCAAATAATGTAAGTACTCCAAATTTAATCAACATATGGTGATGTGTTGATACTTTGCAACTAGAGGACAACACAAGAAGTGGCTTTAAGTTGTCTGAGGGAATGGACCttttaatgtcatttagagaaataaaaaaaatcacaataacaaaatggcaaaaagcTCAACAACATTATTATGCTCACAGATTCCTGACTTTTCagacaaataaatatttcatgCATAGTTCAGTCTTTCGTCAAATCAAAAAGCTTACTTGCATTTACAATTtgaaaattgtaaaatgtattaataaataaaaaatctatatttactttctctgGCATTGTAAGAACATTGTGAGGTGGATTTAAGACATTTAATGCCTGTTTTAAGATACAAATTTAAACCTAAAGACTTCTTAAGAATCTGCAAATACCCTGTGCCTAGTAGTAAAAACCTGCACTGgtacaaaaatcaatatttggtggaaaactcctgtttttttatataacaattttcatgcatcttggcctgtcctcccccaccagtcttgcacactgcttttgggcaTCTTTATGCGACTCCTAGTGCAAGAATTTAAgccgttcagcttggtttgatggcttgtgatcatccaactttcTCTTAATtgtattccagagattttcaatttggtctaATCAATAGAAATGATCatctttaagtggtctctttatttttttgcagagctgtatatgcagacattatttgtttttaccaaCAAATAGGACCCAACTTAAAACCTGTCACAATTAACAGACTGCCTAAATTATAGAtgcaataaaaccaaaattacagacctacatatatatataataagtgaAATAACTTATTAACTCCCGCATGTGCCAAATAAAAACCAACCTGCCTTTGTAAAGTTCCAACTTTTCAGCAGGCACAAACTGGCTGTGTTCAGACAGGCAGACCTGATATGATAGTGCCTAATagcaaaaaaactgcactggTACAGTACGTGTGTGTGCAAATTAAAATCTCTTACTGTGGCAGAGAGCCAGGAAAGGCCTTGTTCTACATGTTATTCTGCATTACCTGTTCTGGATTACATTTGTTAAAGGGTAAAAGGATCAATCCATTAGCTGACATTATCAATCAACATATCAAACTTAAATAACTGCACAGGGTTCTTCAAACCTAGGAACAACTGGACTGACTCTGGgtaaaaactatatttaatgATAATTGGTGCCACCTTTTTGCATGTACACACTGTCAGCTGTAAATTGGGCTGTTAGCGGGttatggaattattttgtgTCTGACATTATTACTAGGAATGACCTAGTGCTGgacggtatgaccaaaaatgaatatcactgtatttttagaTTCCTCatgatatataaatgtattttttattatcatttatattttttgcatggCTGGGATTTAATacaggtttgtgacttactctaCTGCCAGGAGAATAATCCATTAAGGCTTTTAATAAGGGCTTTAATACAGCTTTTAATaagggtttactttgtcccacattaaacaatatataaagaaatcacaCTTCATTAGCagacagataaaaaataaaataaaagccattagaggcattcaagaagtttaatgtttttttattagtcacAATGCCCTTGattttccagttaacaaatacattaaattctgtgtgcaataatattatttttcaaaactacagtaataatatattttcaaaagCACTACAGTTACAGCTCTTTAAGAATTATTGCACCTCATATCCAGTGTTTTAAGGAGTTTTATCTTTtgtgctaaataaataattccgCACTCAAGACTGATTTGGGGCTCATCTAGGAAACGAGGTTAGCGTTTTCTTGAGCTGAGGAAAGATTGCACAATTCCATTCATCTcatttctgagtgaataattgcgAAATTCATCCgcttgctgttgtttttctattttacttgggaaaaaaacactcatatggagaggaacagcagcaggagctgctcAGACAAAGTGCTGTTTTCATCCTTTCCCAGGTAGGATAGATTGAGACAAgtgtttgactccacagagctgagctacaaTCACTtaagtgtgttagcttgttatgctatcTGGCTAGCGTTGGCTCCTAGTATGCTTTTTGGCGGTGTTGTTCTATGCAGCgcaatgtgaaaaatgcataccagAAACCCAGCACTAGAATGACACTTTCTAAGCACAGCACTCATATTTAAAGAATTCAGTGACCACTCATAGCAGACACAATGTTGGGACACACATTGAGCACTGacttctgattattttttttattttgtaaataccTCTCTTAGGTAGTGGTAAAATGCTGCCtgttatattt

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294986 True 2583 lncRNA 0.35 2 18747392 18750080

Neighbor

gene id symbol gene type direction distance location
c25h10orf10 LOC103031081 coding upstream 14871 18731597 ~ 18732521 (+)
LOC103029282 ppifa,LOC108442288,LOC107588732,LOC107668776,LOC108263515,LOC107564349,LOC107673899,LOC105909881 coding upstream 106517 18636068 ~ 18640875 (+)
LOC103028339 LOC108443181 coding upstream 112789 18376648 ~ 18634603 (+)
rps24 LOC102780737 coding upstream 394362 18349740 ~ 18353030 (+)
LOC103025593 LOC108443100,LOC108263458 coding upstream 409571 18322590 ~ 18337821 (+)
ercc6 ercc6 coding downstream 159866 18909946 ~ 18938453 (+)
drgx drgx,LOC107673892,LOC107548637,LOC107588616,LOC107708289 coding downstream 192168 18942248 ~ 18948011 (+)
LOC107197625 vstm4 coding downstream 224979 18975059 ~ 18990050 (+)
LOC103032870 NA coding downstream 267227 19017307 ~ 19019746 (+)
LOC103033826 LOC108443358 coding downstream 330645 19080725 ~ 19089231 (+)
G217438 NA non-coding upstream 33082 18714051 ~ 18714310 (+)
G217435 NA non-coding upstream 48241 18697993 ~ 18699151 (+)
G217433 NA non-coding upstream 51598 18688372 ~ 18695794 (+)
G217431 zcchc24,LOC107564348,LOC106608383 non-coding upstream 57699 18681962 ~ 18689693 (+)
G217420 NA non-coding upstream 322629 18423830 ~ 18424763 (+)
G217472 NA non-coding downstream 188945 18939025 ~ 18939903 (+)
LOC111195980 NA non-coding downstream 469433 19219513 ~ 19231760 (+)
G217696 NA non-coding downstream 522857 19272937 ~ 19273154 (+)
G217715 zdhhc16,LOC108443446 non-coding downstream 612598 19362678 ~ 19365255 (+)
G217768 NA non-coding downstream 747984 19498064 ~ 19518320 (+)
LOC103030769 LOC103030769 other upstream 3065 18743206 ~ 18744327 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 430164 18311893 ~ 18317228 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 708040 18004253 ~ 18039352 (+)
LOC111195981 tacc2 other upstream 1563141 17149342 ~ 17184251 (+)
borcs7 borcs7 other upstream 1739855 17004541 ~ 17007537 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 87264 18837344 ~ 18847028 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 410573 19160653 ~ 19216989 (+)
rrp12 rrp12,LOC106529656 other downstream 573826 19323906 ~ 19345404 (+)
G217874 nkx2-3 other downstream 1270334 20020414 ~ 20074343 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other downstream 1585867 20335947 ~ 20415643 (+)

Expression


Co-expression Network