G217715 (zdhhc16,LOC108443446)


Basic Information

Item Value
gene id G217715
gene name zdhhc16,LOC108443446
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 19362678 ~ 19365255 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU295359
caatatttctatGTTACGATATATtatatacgatataatattgcccacccctacttgccattccctttaagatatTGCTGCGCTTAggggtttttttttgcttctcagcagaggaaactgacctgcttgtttacACTGAAGGTGCACAAGCAGGTCATTaatgggaacagcaatgatgTTTTACTctgcattctgtttattgcagtggcgcacctgtgttttctgccacgtagaaagaaacacaccagaaattatCATGActacacctcatttccagaccacaaTGCCccatagtgtatatatattctgAAACTTTGGTGCTATTTTTATTGGTGTGCgagcaaggcatgaaaataagACTGCTGACAgaatgtaagatagcaattagcGTCGATAAAACATAAGATTAAGCAATGTTTTGGAAACTGCCCGTTaatcttaatgttttttatttatttttaattgtttaaagtgcattttccatttttaaagaGTATACAGAGTGAATATAACAAGCTTTGTTGGTGTGTGCTGATCTGTCTACCTTTCCTCGTTTTGTCATGTATTTGGCTTCTTTACTGTTGATATGTCTTTCAATACTTGTTTCTCCACGGGAGATCAGGATAGCATGCCAAACAGTCAGGCCTCCTAAAGCAACTGCTACTGTGCTTGTAAGGACCCACATGTAAATAACACTTTTATGAAACATTCGGTCCTTAAAGGTGTACGGTGTTGATGATGTATGATAACTCTTCACAGTCATGGGCTCTTGTGGCACGATTCCTATGAGCAGGCCTACACCTGTCACTGGAACCCCTTGCTTTTCCACATCCATGTGTTTGAAGTGATCTATGGCATTATATGCATCTATAAAGAGGGTTCGGCCACTGACGCTGCAGTACAGGCAGCCGAGAGTCATGTAGAGACAAAAGGAAAAGAAATAGCGGTGATTGAAATGACCAACGCAGTTGTTGAGCCAAGCTGAAAATGGACAGTTAAGGTTAATAATGTAAGGggatacataaaaataattctaAACATTCCAAAAGGTTGCAGAAATTGTTAAAAATGAGTCTGGTGCCATAGTACAAATGTCCTCGGTTCTCAAACTGCACATAAGAGACCCCCACAGTGTGTACATTATGCCTGCAAAAATGAGTATTATCTGGGTGCCCATGAGAACTGCTTTAAGAACCACTGCTCTAAAGAACTTTTAAATATATCCATATCTATTTAACATATGGACGCACTGAATATTCTGCAACCACAAGTATTTGGGCGAGTGAAACgacaaattaatttaaacagtgatattttacacattaaggctttcaattaatttaattaatttaatgtactggtggattatttaatgttttggtgCATGCCTAGTTTAAAAAGCTTCACATAAGGGTTCACATTCTGTCTCAAAAGATTGTCTCACATAACGCACCGTGGCAAAAGCCATTTAGTAACCTCTTAAAGAAGCTCTGCATTAGTGCACAGTTGACAAGCTGAAGCAGAGGAACCCTAAACAATGCAGTGTTCCAATCTTTCAGatatttaagctttaaaatAACCCAGGAAGGGTTTTCC

Function

symbol description
zdhhc16 Enables palmitoyltransferase activity. Involved in protein palmitoylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus.

NR:

description
probable palmitoyltransferase ZDHHC16 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU295359 True 1596 lncRNA 0.38 4 19362678 19365255

Neighbor

gene id symbol gene type direction distance location
LOC103037070 antxr1d,LOC108443423,LOC108263270,LOC107673963,LOC107668779,LOC107708254,LOC107588727,LOC106589351 coding upstream 46654 19280170 ~ 19316024 (+)
LOC103036761 LOC108442312 coding upstream 93252 19263976 ~ 19269426 (+)
LOC103035106 arhgap22,LOC108443345,LOC108263673,LOC107668831 coding upstream 218442 19095750 ~ 19144236 (+)
LOC103033826 LOC108443358 coding upstream 273447 19080725 ~ 19089231 (+)
LOC103032870 NA coding upstream 342932 19017307 ~ 19019746 (+)
mettl18 NA coding downstream 7318 19372573 ~ 19374811 (+)
marveld1 marveld1,LOC107665576 coding downstream 18894 19384149 ~ 19387991 (+)
LOC103037144 LOC108443489,LOC103368019,LOC106916418,LOC106964416 coding downstream 409061 19774316 ~ 19804731 (+)
slc25a28 slc25a28,LOC107601050,LOC107719215 coding downstream 642915 20008170 ~ 20019444 (+)
got1 got1,LOC107665595,LOC107586067,LOC107702745,LOC107601049 coding downstream 725956 20091211 ~ 20101103 (+)
G217696 NA non-coding upstream 89524 19272937 ~ 19273154 (+)
LOC111195980 NA non-coding upstream 130918 19219513 ~ 19231760 (+)
G217472 NA non-coding upstream 422775 18939025 ~ 18939903 (+)
G217439 NA non-coding upstream 589267 18718305 ~ 18773411 (+)
G217442 NA non-coding upstream 612598 18747392 ~ 18750080 (+)
G217768 NA non-coding downstream 132809 19498064 ~ 19518320 (+)
G217784 NA non-coding downstream 218826 19584081 ~ 19584405 (+)
G217787 NA non-coding downstream 233723 19598978 ~ 19599243 (+)
G217790 NA non-coding downstream 245984 19611239 ~ 19620647 (+)
G217800 NA non-coding downstream 291589 19656844 ~ 19657051 (+)
rrp12 rrp12,LOC106529656 other upstream 17274 19323906 ~ 19345404 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other upstream 145689 19160653 ~ 19216989 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other upstream 515650 18837344 ~ 18847028 (+)
LOC103030769 LOC103030769 other upstream 618351 18743206 ~ 18744327 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 1045450 18311893 ~ 18317228 (+)
G217874 nkx2-3 other downstream 655159 20020414 ~ 20074343 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other downstream 970692 20335947 ~ 20415643 (+)
mark3 mark3 other downstream 2695708 22060963 ~ 22098259 (+)
G218351 NA other downstream 2852044 22217299 ~ 22218860 (+)
kcnma1 kcnma1,LOC108263740 other downstream 3198543 22563798 ~ 22818114 (+)

Expression


Co-expression Network