G217790


Basic Information

Item Value
gene id G217790
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 19611239 ~ 19620647 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU295466
ctttacaactttgatgccaacatgattctgaggtagcccgtcaatctgtgtagacatacgcccccagggggcggagccaaagctaaaaatctgtttctcaggaaccgtacaagctatgaagctctcctttggcatgtatcatctatggcctatgtcctaatgttttacaaaaggaaaatttgatatgcaaatttttgcgatcgttattagccaatcagattccagcaagcttttgacaggctaaacaatgaccaatcaggacgatacttataccctacatgtatctcagggccttctatcatccattaaaatatggcgttgattggcctcaagggggcgctatagcagaaaatcagttatatctaaaggtacaagtggcctaggcttgttattcttttttagttgtatactttgctgtagcctttacaactttgatgccaacatgattctgaggtagcccgtcaatctgtgtagacatacgcccccagggggcggagccaaagctaaaaatctgtttctcaggaaccgtacaagctatgaagctctcctttggcatgtatcatctatggcctatgtcctaatgttttacaaaaggaaaatttgatatgcaaatttttgcgatcgttattagccaatcagattccagcaagcttttgacaggctaaacaatgaccaatcaggacgatacttataccctacatgtatctcagggccttctatcatccattaaaatatggcgttgattggcctcaagggggcgctatagcagaaaatcagttatatctaaaggtacaagtggcctaggcttgttattcttttttagttgtatactttgctgtagcctttacaactttgatgccaacatgattctgaggtagcccgtcaatctgtgtagacatacgcccccagggggcggagccaaagctaaaaatctgtttctcaggaaccgtacaagctatgaagctctcctttggcatgtatcatctatggcctatgtcctaatgttttacaaaaggaaaatttgatatgcaaatttttgcgatcgttattagccaatcagattccagcaagcttttgacaggctaaacaatgaccaatcaggacgatacttataccctacatgtatctcagggccttctatcatccattaaaatatggcgttgattggcctcaagggggcgctatagcagaaaatcagttatatctaaaggtacaagtggcctaggcttgttattcttttttagttgtatactttgctgtagcctttacaactttgatgccaacatgattctgaggtagcccgtcaatctgtgtagacatacgcccccagggggcggagccaaagctaaaaatctgtttctcaggaaccgtacaagctatgaagctctcctttggcatgtatcatctatggcctatgtcctaatgttttacaaaaggaaaatttgatatgcaaatttttgcgatcgttattagccaatcagattccagcaagcttttgacaggctaaacaatgaccaatcaggacgatacttataccctacatgtatctcagggccttctatcatccattaaaatatggcgttgattggcctcaagggggcgctatagcagaaaatcagttatatctaaaggtacaagtggcctaggcttgttattcttttttagttgtatactttgctgtagcctttacaactttgatgccaacatgattctgaggtagcccgtcaatctgtgtagacatacgcccccagggggcggagccaaagctaaaaatctgtttctcaggaaccgtacaagctatgaagctctcctttggcatgtatcatctatggcctatgtcctaatgttttacaaaaggaaaatttgatatgcaaatttttgcgatcgttattagccaatcagattccaggaacctttgaccctattgacacagaaattgacatacatatatagactgataatctgatcttgattgcaaattttcagccaaatcggacatgttttgcctctacaacggctggaaaactacagcgattttgtaggcctcaagcctgtattatcgcttttttcaaacctaaatggacagaagtcaggaacctttgatcctattgacacagaaattgacatacatatatagactgataatctgatcttgattgcaaattttcagccaaatcggacatgttttgcctctacaacggctggaaaactacagcgattttgtaggcctcaagcctgtattatcgcttttttcaaacctaaatggacagaagtcaggaacctttgaccctattgacacagaaattgacatacatatatagactgataatctgatcttgattgcaaattttcagccaaatcggacatgttttgcctctacaacggctggaaaactacagcgattttgtaggcctcaagcctgtattatcgcttttttcaaacctaaatggacagaagtcaggaacctttgaccctattgacacagaaattgacatacatatatagactgataatctgatcttgattgcaaattttcagccaaatcggacatgttttgcctctacaacggctggaaaactacagcgattttgtaggcctcaagcctgtattatcgcttttttcaaacctaaatggacagaagtcaggaacctttgaccctattgacacagaaattgacatacatatatagactgataatctgatcttgattgcaaattttcagccaaatcggacatgttttgcctctacaacggctggaaaactacagcgattttgtaggcctcaagcctgtattatcgcttttttcaaacctaaatggacagaagtcaggaacctttgaccctattgacacagaaattgacatacatatatagactgataatctgatcttgattgcaaattttcagccaaatcggacatgttttgcctctacaacggctggaaaactacagcgattttgtaggcctcaagcctgtattatcgcttttttcaaacctaaatggacagaagtcaggaacctttgaccctattgacacagaaattgacatacatatatagactgataatctgatcttgattgcaaattttcagccaaatcggacatgttttgcctctacaacggctggaaaactacagcgattttgtaggcctcaagcctgtattatcgcttttttcaaacctaaatggacagaagtcaggaacctttgaccctattgacacagaaattgtcatccagattagtcatgctggtaatctagcttggtcttcacggtcatgctggtcagccgcctgggtcattcttgtttatgctccacccacttaattttttttaaaatttgcataatatgcaaaacctacttttgagatcttgtccttggatccttgaccaatcatgacatgtttggtgtcaaacagttcagcagagcttactcctcaataattattaaaaaaatctttacatttataaacaatatggccgccatatgcaaatgagttctaccatggtgcagtaaaatgtctttaacacttataacttttgaatgcttaacctgacactaataccacttcagtcctttgatcattacatgattctcagataccctgtcagtttaagtagacatacacccccagggggcggggccaatgctcgatagctgtttctctagaaccatacaagctatcaaggtcatcctagccaattatcatctatggcccatgcactaatggtacaccaaatgaaaatttgatatggacacttttgtggtcactattagccaatcacattccagcaagcttttaacAGGCGGAATGTTAATCAGGTCAaaacttatatactatatacgggTTATTTATATGCCCTTTTTATGCCTtgtgttttttcaatttaagaacTGAATTTGTTTCACCAAATGCCCACTAGAGTGCAGTAAGACACCACATAAAACCTGATGAACACTACAGCTCAATTTATCAATGCTTTTCAACTAGTTTACTCACACCACTCATCTAGCATTGCcattatggtctttatggtcacgctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU295466 True 4040 lncRNA 0.40 2 19611239 19620647

Neighbor

gene id symbol gene type direction distance location
marveld1 marveld1,LOC107665576 coding upstream 223248 19384149 ~ 19387991 (+)
mettl18 NA coding upstream 236428 19372573 ~ 19374811 (+)
LOC103037070 antxr1d,LOC108443423,LOC108263270,LOC107673963,LOC107668779,LOC107708254,LOC107588727,LOC106589351 coding upstream 295215 19280170 ~ 19316024 (+)
LOC103036761 LOC108442312 coding upstream 341813 19263976 ~ 19269426 (+)
LOC103035106 arhgap22,LOC108443345,LOC108263673,LOC107668831 coding upstream 467003 19095750 ~ 19144236 (+)
LOC103037144 LOC108443489,LOC103368019,LOC106916418,LOC106964416 coding downstream 153669 19774316 ~ 19804731 (+)
slc25a28 slc25a28,LOC107601050,LOC107719215 coding downstream 387523 20008170 ~ 20019444 (+)
got1 got1,LOC107665595,LOC107586067,LOC107702745,LOC107601049 coding downstream 470564 20091211 ~ 20101103 (+)
hpse2 hpse2,LOC107747298,LOC107665577,LOC107702736,LOC107719234,LOC107586094 coding downstream 525195 20145842 ~ 20222597 (+)
hps1 hps1,LOC107719232,LOC107601045 coding downstream 616413 20237060 ~ 20251768 (+)
G217787 NA non-coding upstream 11996 19598978 ~ 19599243 (+)
G217784 NA non-coding upstream 26834 19584081 ~ 19584405 (+)
G217768 NA non-coding upstream 92919 19498064 ~ 19518320 (+)
G217715 zdhhc16,LOC108443446 non-coding upstream 245984 19362678 ~ 19365255 (+)
G217696 NA non-coding upstream 338085 19272937 ~ 19273154 (+)
G217800 NA non-coding downstream 36197 19656844 ~ 19657051 (+)
G217809 NA non-coding downstream 128219 19748866 ~ 19755067 (+)
LOC111195994 NA non-coding downstream 184163 19804810 ~ 19807083 (+)
G217861 NA non-coding downstream 384405 20005052 ~ 20005447 (+)
G217868 NA non-coding downstream 386306 20006953 ~ 20007208 (+)
rrp12 rrp12,LOC106529656 other upstream 265835 19323906 ~ 19345404 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other upstream 394250 19160653 ~ 19216989 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other upstream 764211 18837344 ~ 18847028 (+)
LOC103030769 LOC103030769 other upstream 866912 18743206 ~ 18744327 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 1294011 18311893 ~ 18317228 (+)
G217874 nkx2-3 other downstream 399767 20020414 ~ 20074343 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other downstream 715300 20335947 ~ 20415643 (+)
mark3 mark3 other downstream 2440316 22060963 ~ 22098259 (+)
G218351 NA other downstream 2596652 22217299 ~ 22218860 (+)
kcnma1 kcnma1,LOC108263740 other downstream 2943151 22563798 ~ 22818114 (+)

Expression


Co-expression Network