G218108


Basic Information

Item Value
gene id G218108
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 21318475 ~ 21320832 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU295907
ACAGCTTTCTCGTCTTTTGTCCGTAGcctgacaaacaaaaaaaatcttcatacATCAAAACTGTCACATTTTTTGCCCACGTAATTCATCTCACAGATTTagcatataaacattataagcACAGTATGACAGTATTACAGGAGTATGATACAttatacacaacacaacactcaGTAAACAACCTTGTGCCGTCTGTTCAGCAGCCAGTCACAACAACCTACGCAATCGCTTCATGGTCACAAGGGCACGTAGATGTGTCCAAACAGCACTAATCGGTGAGGTTTAATCTGAGGCCTGTGAAAAAGGAGGCTTAATAAGGCGATAGGTTTTGTGTTAATTGATTAGCTGTGATTTGAtcttctcagccaatcagattagaCCTCTAACACATTTAAAGGCTGTATTTAGAGTGTGCAGGAGGCTTAAAGGAGGCCAGACAGATACATACAGACTATTATAAAAGAATATATGGATTAATTAGAGGTTAAGTTATCTATAAGGGCTTTCTATCAGTAATTAATGAACAGTCCTTTATAATAGCAGCAAACAGAAGTAGCCCTAATAGGATGTATCAGTTTAGTACCATGCTTTGTGCACCCTTATTTTCATACAGCACCATTTTGGGTGTGTGGCCCACAAGGAGTGCAAGAtacaaaaacatctaaaaacacATGAAATTCCTGGTCTGGAAGTGAATATGTCTTTCTTAGCCTTCACTACTTAATGATTGTTCAGCTTGTTGACCCTACATTGGATTTGTTATGTCACAAATGGCCATGAACCTTTCATTAGCAGCTCTAATTTGGACAGTATGCTAACTCATTTGCCCTCAAACACAGTGGTACAGCGCAGAGTACAGTTATCTGCCTGGATATGGCTGCTCTCAAAAACTACAAGGATGTTGCTGATGCCAGGAAAGCTAGCATGTTTTAACCTGCTTGTCTTGGTCAGTTAAACCCTGtggaaacaataataattaaattgttaATTATCATAATACATCGTCTTTAGGAGGTGAATGTTTTGATATCAGTAAAtatcaattatatttatattaaatatgctAAACATAATATTTGTTGTATTGGTCAGCTTGACTCATTAgtgacaatataaaaaaaaaaaagcttcataagtaaaaaaaacaaatgaccaAAACTGAggccaattttttttcttttttttttttgtaaattctgAATTATCATAACTACATCATGCTCTGTAAGGGGTAAAATGTCTGATATCACCGAATATCAatttcatttatattaattatggtaaaaaatattccttttaaccattaaaaaacGACCAGGATATTGCTGCTGCCAGACAAGCTAAAGCCTCTCAGCCTGCTTGTCTTGGTCATGTtaccacacacactgtcctgctGTGCTCTATGAGGTcgtttaatgcatttacataAAGAAGTGGTTATGTCTCTAGACAGATTCTTGGCAGGCATAGAGAAATCCCATTTAGAGTAATGGTAAAGGATTATCGGTCTACGTACTGGACATTCCTACACatttaaggagaaaaaaaatcacaaatattACATAACAGCTGACAGTCAGCCGGACCACACCAGTGTCAGGTCATCTGCTGCTtccattattataatatatgctTACAGACATAGGAATTCACAGAGGGTACAGATGTTTTACAGACTGTGCATCTAAGTCTGCTGTCCTGTCCTGTACACACACTAGCCCAGATTAGCATTTCAAGGCCATTTTTTccataatataacagatttacagttattaatacagtatatagtacttttattttttgattttatTGCTGCTTCTGAAAGATATTTCACAGAAATGTTcagataaaaaaagtaaaagtgaaatGCCCCAATAAAATGTTCTACATAGGAGCAGATGGTAATACGCGGATATTTCTTATATTCTTATGTTCTTATATTTCTATATACTTCTATATAGACTTTACAGCCACACCCAAATTCATTTCTAAGTATATGTCATTCATATGTGGCCACTAACATGTGTTGAATGACAAATATGCTGTAGCAGACACATGAATATGTCCATAGTACACtcatttaaacatactgtacatatggGTGCATGTCAAGGTCTGAAGGTTTGAAGGTCACCTCCGTTTTGCATCTTAACCCTTTTCCCATCAATCACAGTTCACTTTCTCATCCACTTCTTCTTATCCTCCCTCTGCTCACTGTCTTTCTGTGCCTGGATCTGTACAACTTCAGCGCGTCCTCCTCTTCAGGGAAATGTTGCCCCATCATACGCCATCTGTTCAGCGTCC
>TU295908
AGGAATGCAATATGCATATAGAAATATTCGTATAATACAATACACAGTATAAAGACAGCTTTCTCGTCTTTTGTCCGTAGcctgacaaacaaaaaaaatcttcatacATCAAAACTGTCACATTTTTTGCCCACGTAATTCATCTCACAGATTTagcatataaacattataagcACAGTATGACAGTATTACAGGAGTATGATACAttatacacaacacaacactcaGTAAACAACCTTGTGCCGTCTGTTCAGCAGCCAGTCACAACAACCTACGCAATCGCTTCATGGTCACAAGGGCACGTAGATGTGTCCAAACAGCACTAATCGGTGAGGTTTAATCTGAGGCCTGTGAAAAAGGAGGCTTAATAAGGCGATAGGTTTTGTGTTAATTGATTAGCTGTGATTTGAtcttctcagccaatcagattagaCCTCTAACACATTTAAAGGCTGTATTTAGAGTGTGCAGGAGGCTTAAAGGAGGCCAGACAGATACATACAGACTATTATAAAAGAATATATGGATTAATTAGAGGTTAAGTTATCTATAAGGGCTTTCTATCAGTAATTAATGAACAGTCCTTTATAATAGCAGCAAACAGAAGTAGCCCTAATAGGATGTATCAGTTTAGTACCATGCTTTGTGCACCCTTATTTTCATACAGCACCATTTTGGGTGTGTGGCCCACAAGGAGTGCAAGAtacaaaaacatctaaaaacacATGAAATTCCTGGTCTGGAAGTGAATATGTCTTTCTTAGCCTTCACTACTTAATGATTGTTCAGCTTGTTGACCCTACATTGGATTTGTTATGTCACAAATGGCCATGAACCTTTCATTAGCAGCTCTAATTTGGACAGTATGCTAACTCATTTGCCCTCAAACACAGTGGTACAGCGCAGAGTACAGTTATCTGCCTGGATATGGCTGCTCTCAAAAACTACAAGGATGTTGCTGATGCCAGGAAAGCTAGCATGTTTTAACCTGCTTGTCTTGGTCAGTTAAACCCTGtggaaacaataataattaaattgttaATTATCATAATACATCGTCTTTAGGAGGTGAATGTTTTGATATCAGTAAAtatcaattatatttatattaaatatgctAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU295907 True 2304 lncRNA 0.37 1 21318475 21320778
TU295908 False 1122 lncRNA 0.37 1 21319711 21320832

Neighbor

gene id symbol gene type direction distance location
hells hells,LOC107678596,LOC107727385,LOC107589556,LOC107708407,LOC107586490 coding downstream 52263 21253416 ~ 21266212 (-)
galm galm,LOC107699302 coding downstream 85982 21228607 ~ 21232493 (-)
LOC103031896 NA coding downstream 117559 21184896 ~ 21200916 (-)
trnar-ccg_27 NA coding downstream 251330 21067073 ~ 21067145 (-)
trnar-ccg_26 NA coding downstream 251891 21066512 ~ 21066584 (-)
LOC103041230 LOC108442385,LOC107699307,LOC107586507,LOC108263686,LOC107708387,LOC106576682 coding upstream 9049 21329881 ~ 21353974 (-)
LOC103029456 col13a1 coding upstream 42920 21363752 ~ 21518400 (-)
gbf1 gbf1 coding upstream 284472 21605304 ~ 21702024 (-)
ninl ninl,LOC108263056 coding upstream 450675 21771507 ~ 21803749 (-)
LOC103024928 NA coding upstream 631045 21951877 ~ 21961653 (-)
G218107 NA non-coding downstream 2969 21313723 ~ 21315506 (-)
G218106 NA non-coding downstream 5556 21312557 ~ 21312919 (-)
G218105 NA non-coding downstream 22925 21294774 ~ 21295550 (-)
G218093 NA non-coding downstream 36009 21282066 ~ 21282466 (-)
G218091 atl2,LOC107678587,LOC107589558,LOC107708410,LOC107586488 non-coding downstream 70900 21245183 ~ 21247575 (-)
G218123 NA non-coding upstream 81462 21402294 ~ 21403522 (-)
G218172 NA non-coding upstream 257715 21578547 ~ 21578788 (-)
G218177 NA non-coding upstream 275829 21596661 ~ 21597632 (-)
G218181 NA non-coding upstream 322632 21643464 ~ 21644104 (-)
G218241 NA non-coding upstream 529528 21850360 ~ 21851258 (-)
LOC103031576 cisd1,LOC105902329,LOC108443718,LOC107549159,LOC107747252,LOC107665600 other downstream 111649 21160374 ~ 21206826 (-)
G217886 NA other downstream 1236116 20081312 ~ 20082359 (-)
LOC103036840 crtac1,LOC108443504,LOC107665558,LOC107702729 other downstream 1443284 19822618 ~ 19875191 (-)
G217723 rrp12 other downstream 1975589 19336645 ~ 19342886 (-)
c25h10orf53 NA other downstream 3613429 17702597 ~ 17705046 (-)
LOC111195999 NA other upstream 387955 21708787 ~ 21757408 (-)
G218240 NA other upstream 530540 21851372 ~ 21855141 (-)
LOC103022835 NA other upstream 717591 22038423 ~ 22045112 (-)
G218329 eif5,LOC107589547 other upstream 731057 22051889 ~ 22056493 (-)
G218545 NA other upstream 1524001 22844833 ~ 22846205 (-)

Expression


Co-expression Network