LOC111195999


Basic Information

Item Value
gene id LOC111195999
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 21708787 ~ 21757408 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296033
GGGCAGCTTCAGATGAACAGCAGGACACCACAGACACTGTCCTTACTGTAAGTGAGGCCGATTTACACAACCCTCAAGCTTCGGAGGAGGACGAATCAGGGGACATGGTTGTCCTGGTAGTAGGAGAAGAACCCCAGGTGAGACCGAGACCAAATAGTCCCCCCATTTCTGAAGGAGAGGCCTTGCTAGTGCCTATGCCCCTACGTCGATCAAGTAGATCCAATGCAGGCCAACACTCTAACCCTCACCGGCTCCCCCGAGCAGCTATAACAGAGCAGCAGGAGGAAGAACCTCCTGAACGGGAAGCATGAGTGGCCAGTGTCATCGTCGGGACGCCGATTCATTTGGAGGGGGTGGATTGTAGCCAGCtattgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcgtgcaGGTGCAGGGGGCGTGAACGAGTTACGTCATTAACTAGGGCGCCAGCATTAGCGAGTCAGTGTGGTCCTGCAGGCACTTATATACGCACCTATAGGGGGTCCTATTGAAGGTAGCACTGTGTGGCTAAGCTAACGCGAGTAGCAGCGTGGGCTGGAGACGATTCTCTGAGCTAGTGAAGTACTCAGTGAGAACAGGAGTGCCCGAGGCTGAGCGACTGTGAGtggctataaatagcaacagtcTGTGTTTGTGCCTGGCGACGTGATATAAGAGCTCTTGGCTAAGCTGCTTGTTAATTCCTACTTATCCTGACTAACTTTGAAGGTATTTTTGATCAGAGGTTTAAAGCTGCTACCCTGTCCATGGGCGAAGTTAGCATTCCACCTTGAGTTAAGTGGTATGTCTCTTCTGGTAATTGAATGCAAGTTGCACTGTTTTTATGTGATGaatgtattaatgtgtgttttgtgtatttgcATAGAGAGCCACAGTTCCAGTGGTTGCCAGTTGctgttttctgctcttttttgtatttctttttttttattttttttgtttattctacCATAAATTTTGTAGCACTAAGTGTATTAACTGCTCAGgtatttttaagtattgtgGTTTTTAACTATGTGCTCTGTATAGACTCTAGCCTATTTGTAACCATGTGGTACAATTAGTCAATTTTAGCTGTGGCTATAATTGTTACTGGGACTGGGGGTTTGGAGTCAACCATATTCGGCTAAGTCCTGTTCACTAGAAGtgtgattcttttttttgtacttagtttattttatttttaagtttgctGTGCAGTGATTAAGTAAACTTTATTCACGTGTGTTCTTTTGGTCCTATTGGATTGACTTCATATTTCTCCATACCCTGGACCCAGTGGTCATGGGTAAATTGTGattttcttaaatttttatatatatatttcctctcACCCAATAAATGAAACTGACAGTAGATTTGACTTTGGTACggttttaaataaatcattgtATTTTGTACTACAGTCAAGTTCTTGTGTCTTATTTGAGAGTTCCCcttactctaaataaaataagtaatttaagGGGTGGCGTAGTCTGGTAACCCCTAGT
>TU296037
GGGCAGCTTCAGATGAACAGCAGGACACCACAGACACTGTCCTTACTGTAAGTGAGGCCGATTTACACAACCCTCAAGCTTCGGAGGAGGACGAATCAGGGGACATGGTTGTCCTGGTAGTAGGAGAAGAACCCCAGGTGAGACCGAGACCAAATAGTCCCCCCATTTCTGAAGGAGAGGCCTTGCTAGTGCCTATGCCCCTACGTCGATCAAGTAGATCCAATGCAGGCCAACACTCTAACCCTCACCGGCTCCCCCGAGCAGCTATAACAGAGCAGCAGGAGGAAGAACCTCCTGAACGGGAAGCATGAGTGGCCAGTGTCATCGTCGGGACGCCGATTCATTTGGAGGGGGTGGATTGTAGCCAGCtattgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgttagtgtgtgtgtgtgtgtgtgt
>XR_002651937.1
CAGAACTGAGGGCAGCTTCAGATGAACAGCAGGACACCACAGACACTGTCCTTACTGTAAGTGAGGCCGATTTACACAACCCTCAAGCTTCGGAGGAGGACGAATCAGGGGACATGGTTGTCCTGGTAGTAGGAGAAGAACCCCAGGTGAGACCGAGACCAAATAGTCCCCCCATTTCTGAAGGAGAGGCCTTGCTAGTGCCTATGCCCCTACGTCGATCAAGTAGATCCAATGCAGGCCAACACTCTAACCCTCACCGGCTCCCCCGAGCAGCTATAACAGAGCAGCAGGAGGAAGAACCTCCTGAACGGGAAGCATGAGTGGCCAGTGTCATCGTCGGGACGCCGATTCATTTGGAGGGGGTGGATTGTAGCCAGCtattgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcgtgcaGGTGCAGGGGGCGTGAACGAGTTACGTCATTAACTAGGGCGCCAGCATTAGCGAGTCAGTGTGGTCCTGCAGGCACTTATATACGCACCTATAGGGGGTCCTATTGAAGGTAGCACTGTGTGGCTAAGCTAACGCGAGTAGCAGCGTGGGCTGGAGACGATTCTCTGAGCTAGTGAAGTACTCAGTGAGAACAGGAGTGCCCGAGGCTGAGCGACTGTGAGtggctataaatagcaacagtcTGTGTTTGTGCCTGGCGACGTGATATAAGAGCTCTTGGCTAAGCTGCTTGTTAATTCCTACTTATCCTGACTAACTTTGAAGGTATTTTTGATCAGGTAGGCTTAAACTATTGCACTTTTTAAAGTTCTGTAATAGTTTGAGTGTTTTAGCTTTGGTTGCTACCACTATATTTAACTGCTACCACTATAGTTAACACTAGTACTCTTTCGAATAGTTATCTGGGGGCTCTAGGTAAGATGTATGTCTCCATATGCTCTGTAATAGTAGGCAAGTGTCTGCTGCATTCTAATTGTACATTATTAGAGACACTATGCTTTTGAGCTGCTTTAGCTCCATGTGCTGTCTTGTAATAGTTTGAGTGTTTTAGCTTTGGTTGCTGCTATTATATTTAACTGCTACTACTACATTTAACACTAGTACCATTTCTAGAATGGTCACTTGGGGACTTTAGGTAAGATATGTCTCTATGTTCTGAACAGAATGCAAAATGGGTTTTATATCATGTTTCAATTGCTTTTGTGTGATCTATTTCTAATAGAGGTTTAAAGCTGCTACCCTGTCCATGGGCGAAGTTAGCATTCCACCTTGAGTTAAGTGAGAGCCACAGTTCCAGTGGTTGCCAGTTGctgttttctgctcttttttgtatttctttttttttattttttttgtttattctacCATAAATTTTGTAGCACTAAGTGTATTAACTGCTCAGgtatttttaagtattgtgGTTTTTAACTATGTGCTCTGTATAGACTCTAGCCTATTTGTAACCATGTGGTACAATTAGTCAATTTTAGCTGTGGCTATAATTGTTACTGGGACTGGGGGTTTGGAGTCAACCATATTCGGCTAAGTCCTGTTCACTAGAAGtgtgattcttttttttgtacttagtttattttatttttaagtttgctGTGCAGTGATTAAGTAAACTTTATTCACGTGTGTTCTTTTGGTCCTATTGGATTGACTTCATATTTCTCCATACCCTGGACCCAGTGGTCATGGGTAAATTGTGattttcttaaatttttatatatatatttcctctcACCCAATAAATGAAACTGACAGTAGATTTGACTTTGGTACggttttaaataaatcattgtATTTTGTACTACA

Function

GO:

id name namespace
GO:0008865 fructokinase activity molecular_function
GO:0004396 hexokinase activity molecular_function
GO:0019200 carbohydrate kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296033 False 1531 TUCP 0.43 2 21755426 21757399
TU296037 False 427 lncRNA 0.54 2 21708787 21757399
XR_002651937.1 True 1811 lncRNA 0.42 2 21755514 21757408

Neighbor

gene id symbol gene type direction distance location
gbf1 gbf1 coding downstream 6763 21605304 ~ 21702024 (-)
LOC103029456 col13a1 coding downstream 190387 21363752 ~ 21518400 (-)
LOC103041230 LOC108442385,LOC107699307,LOC107586507,LOC108263686,LOC107708387,LOC106576682 coding downstream 354813 21329881 ~ 21353974 (-)
hells hells,LOC107678596,LOC107727385,LOC107589556,LOC107708407,LOC107586490 coding downstream 442575 21253416 ~ 21266212 (-)
galm galm,LOC107699302 coding downstream 476294 21228607 ~ 21232493 (-)
ninl ninl,LOC108263056 coding upstream 14099 21771507 ~ 21803749 (-)
LOC103024928 NA coding upstream 194469 21951877 ~ 21961653 (-)
LOC103023885 NA coding upstream 211371 21968779 ~ 21990029 (-)
LOC103021922 ckb,kcrb,LOC108444021,LOC107698148,LOC108263462 coding upstream 342173 22099581 ~ 22106482 (-)
bag5 bag5,LOC107698150,LOC107708429 coding upstream 386069 22143477 ~ 22161588 (-)
G218181 NA non-coding downstream 64683 21643464 ~ 21644104 (-)
G218177 NA non-coding downstream 111155 21596661 ~ 21597632 (-)
G218172 NA non-coding downstream 129999 21578547 ~ 21578788 (-)
G218123 NA non-coding downstream 305265 21402294 ~ 21403522 (-)
G218108 NA non-coding downstream 387955 21318475 ~ 21320832 (-)
G218241 NA non-coding upstream 92952 21850360 ~ 21851258 (-)
G218261 NA non-coding upstream 128802 21886210 ~ 21886597 (-)
G218266 NA non-coding upstream 170060 21927468 ~ 21928790 (-)
G218273 NA non-coding upstream 194035 21951443 ~ 21951793 (-)
G218307 NA non-coding upstream 237411 21994819 ~ 21995213 (-)
LOC103031576 cisd1,LOC105902329,LOC108443718,LOC107549159,LOC107747252,LOC107665600 other downstream 501961 21160374 ~ 21206826 (-)
G217886 NA other downstream 1626428 20081312 ~ 20082359 (-)
LOC103036840 crtac1,LOC108443504,LOC107665558,LOC107702729 other downstream 1833596 19822618 ~ 19875191 (-)
G217723 rrp12 other downstream 2365901 19336645 ~ 19342886 (-)
c25h10orf53 NA other downstream 4003741 17702597 ~ 17705046 (-)
G218240 NA other upstream 93964 21851372 ~ 21855141 (-)
LOC103022835 NA other upstream 281015 22038423 ~ 22045112 (-)
G218329 eif5,LOC107589547 other upstream 294481 22051889 ~ 22056493 (-)
G218545 NA other upstream 1087425 22844833 ~ 22846205 (-)
march8 march8 other upstream 1696767 23454175 ~ 23656986 (-)

Expression


Co-expression Network