G218314 (exoc3l4)


Basic Information

Item Value
gene id G218314
gene name exoc3l4
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22013475 ~ 22017817 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296215
tcagacctcttccttcctcttcaaAGAAAACCTGGTGGTAGAGTTTTTTTATTCCCATTTGAGTTCATAGcagaagtttattttaaaaacgtaatatattaatagtagtcaaaataaattatcagacacACTTACACTACTTAAAAGTTAAAGCACAGacaattatttaattgttagttttttttttttttttaggcgaCATGTTATTGGTTACAAACTTACAGTTGATTTGCTGCTTATTTACAAAGCACTGTTGCAATGCTGCATGCTCTACCACAGTTTTTACCTTATACTGCATTGCACTGCACTGTTTGGATTGTTGTCATCAActcaaataaaatcaattttatttatatcgcGCTTTTTACAAATAATGTTGTTTCAGAGCAGCTTCACATAAATCAGGTAGCAGGACAAACACAACAcataaaatctgacaaaaaaagaTACTTAACAATACAAAACAGATTGATATAACTCCTAAAAGTGTGGATTTCACCTGGATAGTGTGGATTATAGCAATAATAAATAGAGTGAATGTCACGAGTTCAGTTTCCCACAACATCAAAAGGTTCATCAAAAGGTTCATTCGCCAGGAAGAAGTCTGACAGACTCAAAGCCACAACAGCATCAGAAGACGAGATTCTGAGAATCAACAGTCTTTGTGACTGGTAGCTCACATGACAACACATCGACTGCTTAACACCGGACCAAGTTTTAACTGTGAATGGAAGCTGCAGCTGAGACTATGTGGCAGTAGGAAAAAACACTGCTAAAATGCTTGCTACTAAAAAGATTGGGGGTGTTTTAAAAATCTCAAGCATAGTGTATATCATACACTGATATTGAGCAACTCTTTGATTTGTTTTCATTGgagaacaacagaaaaaaatactatgtcaacaaaacaatacaacacaatccTATATCAAGTGATGAAGTGGGCTGAGAAGTGAGGAAGTTCATTTGACGTTCATAGCCAACACAATTGCCACATTAAATACCACTTGTGGGACTATGTTAAGAAATGTGCAGAAAAGGTCAATATAACCACCGTAGGAGGAACATGTGGAAGTTGGCTTGTATTGATTTAAACCACATACCAAAAAGTTGGGTGTACTCACACGGTTTGGTTAAATCGTACTGGAGCACAGTTCTCCCCGATTCCCCACTCCGTCGCTTAttgataaaagcagagataatCCACTTTAATTtgcttaagccctatccggatgggattagtttctcagggggacgtctgtaaaaaatatttcacacttctactcagtgataaaactcttgcatctggactgcaattgaaaaaacagaagtGTTGTCACATGAGGAATTGGTTCAGTaactcctccatttccactaactgttgtgtttacatggatctccgtggaaatgcgCTCCCACAGTGTatttacggtgcgtggcagtgaacaaatagctattttattaaatgtaaggtgacgaaactcagagatctgcgttaaaattaataaaattaataaaattaccGAACGACCActgagttcagcgaaaaacagtaggtagttctgcctgtaattttctcagagaacatctaagaaaaacacatacatggtcgttccccaataacagagaaaattacccaggaCCCCCAGGAAATTAATCCTTTCCGGATGGGGCTTTAGAAATATGCACTAATAGCCACAGTTGTCTCAGTCACGGTTACatacataccaAGTGGAGGggcttttcctggtgggggtgctgaattcggcacaacaccaccaTGCTTGTTTACAGGAACTTCCAAGTACTCCCCAGTGTAGCTGTTGTGTGGGCTTTTTTCCCTTTTGCAATCTGCAAACTATTCATTATTTGTCTATCTTGCAAAGGAGTTTAAAACAGTACAGTGAACTGCATTAATTACTTATTTGTAACTGATTGGCTTGCTATATCTTGTGAAGTGACACAGGGTTCTATGGTAGGGCCTGTGACACTGATAGAACTACACAGAAGCAAAATTGTGAGAGTACAGAACTTGTGTGGGCTTGCATACAAAATCTAATGGATTAAGCACTAAGAACaaattagtatatatttttatgaaaccttttataaatttctattatgaatatttttgtGGATAGAGCAAATACCATCTGGCGTACACTCATGGGATGCTTTCCAAACCACCAGTGGAACACATACCATAGTTTGGAAACTCCCATAGAATACACTTTGCAGTCCCCAGACATCTTAACAAAAGTTCATGTCTCGTACAATCAGGTGTAACTCAATAGAGATTTATCATTGTTTTTCATGCAATTTGATTCTAATAAGCCTTAAGATATAGATGTTTGTgaggtttaaggggttaaaacatGAGATCtctattttaaaagtacttGATCAGCATATGTCTAGTCTACAACCCCTCAGTAAGAGCACACAGTGCAAAATTCACAGTTTCTCGACTAACTGTCTGGGAGTAGCATGGAGAAGCAGGAGAAAGGCAAGTTGGCCAGACAGTCCGTGTTCACTGCTGGCTGAATCTCAGTAAAGAGGGCATGCTCTGTCTTCCCAGATATTTTGTGGAGTCGTTTCAGCTCAGAGAGCTTCTGCAGAATCACTTGTCTCTCCCTGCCTCGGCTCATTCCACGAAAATACAGCACAGCTGAGAGATGTTTTTTACTGTGAG

Function

symbol description
exoc3l4 Predicted to enable SNARE binding activity. Predicted to be involved in exocyst localization and exocytosis. Predicted to be part of exocyst. Orthologous to human EXOC3L4 (exocyst complex component 3 like 4).

NR:

description
PREDICTED: exocyst complex component 3-like protein 4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296215 True 2692 lncRNA 0.38 2 22013475 22017817

Neighbor

gene id symbol gene type direction distance location
LOC103023885 NA coding downstream 23446 21968779 ~ 21990029 (-)
LOC103024928 NA coding downstream 51822 21951877 ~ 21961653 (-)
ninl ninl,LOC108263056 coding downstream 209726 21771507 ~ 21803749 (-)
gbf1 gbf1 coding downstream 311451 21605304 ~ 21702024 (-)
LOC103029456 col13a1 coding downstream 495075 21363752 ~ 21518400 (-)
LOC103021922 ckb,kcrb,LOC108444021,LOC107698148,LOC108263462 coding upstream 81764 22099581 ~ 22106482 (-)
bag5 bag5,LOC107698150,LOC107708429 coding upstream 125660 22143477 ~ 22161588 (-)
ttl ttl,LOC107678537,LOC107698152 coding upstream 204723 22222540 ~ 22233232 (-)
ikzf1 ikzf1,LOC107698154,LOC107721232,LOC107708437,LOC107589539 coding upstream 232915 22250732 ~ 22274892 (-)
spata48 NA coding upstream 266735 22284552 ~ 22296772 (-)
G218307 NA non-coding downstream 18262 21994819 ~ 21995213 (-)
G218273 NA non-coding downstream 61682 21951443 ~ 21951793 (-)
G218266 NA non-coding downstream 84685 21927468 ~ 21928790 (-)
G218261 NA non-coding downstream 126878 21886210 ~ 21886597 (-)
G218241 NA non-coding downstream 162217 21850360 ~ 21851258 (-)
G218369 NA non-coding upstream 43228 22061045 ~ 22061924 (-)
G218370 mark3 non-coding upstream 66358 22084175 ~ 22091958 (-)
G218371 mark3 non-coding upstream 70378 22088195 ~ 22097788 (-)
G218374 NA non-coding upstream 81325 22099142 ~ 22099395 (-)
G218376 trmt61a,LOC107582491,LOC107698149,LOC107678528,LOC107589545 non-coding upstream 91358 22109175 ~ 22120063 (-)
G218240 NA other downstream 158334 21851372 ~ 21855141 (-)
LOC111195999 NA other downstream 256067 21708787 ~ 21757408 (-)
LOC103031576 cisd1,LOC105902329,LOC108443718,LOC107549159,LOC107747252,LOC107665600 other downstream 806649 21160374 ~ 21206826 (-)
G217886 NA other downstream 1931116 20081312 ~ 20082359 (-)
LOC103036840 crtac1,LOC108443504,LOC107665558,LOC107702729 other downstream 2138284 19822618 ~ 19875191 (-)
LOC103022835 NA other upstream 20606 22038423 ~ 22045112 (-)
G218329 eif5,LOC107589547 other upstream 34072 22051889 ~ 22056493 (-)
G218545 NA other upstream 827016 22844833 ~ 22846205 (-)
march8 march8 other upstream 1436358 23454175 ~ 23656986 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other upstream 1817962 23835779 ~ 23849800 (-)

Expression


Co-expression Network