LOC103022835


Basic Information

Item Value
gene id LOC103022835
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22038423 ~ 22045112 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296231
TAGTCCTAGTGTTTAAAGACTCCTGATATGGTTTGGCTATGTCTTTTCTACTACATTACTGCAGGTCCTGAGTAGATGAACTTCTGCTTTGACATTTTTCTGTCACTGACATAGATTGGTACCTGgagtttacattttaaagacaaaatCAATCACATACAGGTGATAAAAGTGCTTCACTGTTAttaaaacctctgtttacacaGTTGTACTGACTATGTTTACAGGTATACCAGATATATGtctatttactgtgtactttgaTTAAGGCAGGCTGCTTTCTGTACACAATGTGTCAGCGTCCGt
>XM_022684450.1
tatttaactagctagctaactttcttGTTCTactttaaatggtgcaacagacaacAGAGACTGCAGTATTTAAGGAATGAAAAGATAAAACAGTGTTgaagctaaaataaaagctcataTCAGCTCcctatcacagaggaattaagaaattggcaataataattaattgcaccACCTGCTCCCTTTCTGAAGACTTacgatgccctaaagttaataagttaaccagcagctaggttactgaagtTTAGCACTCTACTGCTATAGTTATATCTGTACTGAGTGCTTAAATGGTTATCCCAATTCTTATGgaggaggatttcacccctttccCTGGTTCcaagggttacactcgaaaacaaggggtaggggtacataagagaaatgggattgggtctAAATGTGCACATGTATTGCAAGTGGTAGCTAGGTAGCCTGAAAACTGTTGGGAGATTCTAGTAAAATTTAACTTTAACTGATATTTTCCCAATTTATCTAAGAAACTTCTAATAAAACAAGGAAAGCTTGGGGAATTTAGGACTGGATGGAGACTGGAAAGAGCTTCTAGGGAAAGTACATGTAACTGGGACTGCCCTGCAGGGGGCGGGACATCACTATCTCATTGGGGAATACCAGGCAAAGCCAAAAAGAAAAGCAGGGCTTCTCATATActgggagtgtgtgtgcgtgtgtgatcCAAGGATATATGCTGAGCTGAATGGTAGTACCATTTACTAGAAAATTTAATTAGAAGTCAAAGAGAGCAAAACAGAAACATGTCAAAGTTTTTAAAAACGCTTACTTCTTCAGTAAAGAGGAAAAGTTGGACCAAGGAAGAAGACAGCAGGACACTTCTAGGAAACTCTGCTGAGGAACATGACCTGGTGAATGGAGGTTGCACAAATCAAACATGCTTGAATAGTGCAGTCCAGTGTGGAGCAAACCCTGAGGAACATGCCAAGAGTGTCATGTCCATTCTCCGGGTTGTCCTTCTAGAAGAAAGGTCCCAGGAGCTGAAAGAAGCTGCAGAGCAGGTCAAACAATGGGCAACGCTAAACAGTGTTACACTGGAGGGAAGAAATCGTGGCTACCCTCAAAGATGGTTGAGAGAGTACCTAATTATTGTGAAATTGTCTGTAGAGAAACATTTTCCTGCCCTGCCACCAGACGGGGCTGAAAATTCGTACAATGAGACAGTGGAATACCTGAAAAATGCAAAGAGGTCAGTGTGTATGAAGCTGACaggtctggctgatgttttagAGGATGCAGGACTGCTGAGTTACCTGGTTGACAGCTATAATCACCGCCTGTTTGCTGTGTTGGAAATATTAATGGACAGAAGTTCATCAATGAAAGAGGCTCTCTTCCTTCTGCAGTGGGTGACGCAGACATACGTAAGtcatggCTCAAACATCAAGGATGATGTACTTAGAGTGTCTGACCCTCTGTTGCTGACTGGATGGATTGAAAAGTCAAAGCAGAAGATCCTTACACTCTATCAGGACAACATCTCCACAGCACTACAGGGGGTCCTGCTGTACAATGAGGCTAAATGTGATTACAGCAAGGAGGAGGAactcattaaaatacatttagatgtTCTTCAGTGTCTCAATGGTGCTGTTGAGGAGACAAAAACCATCAGCCCCATTCTGATGACAGCTGTTCAACAAATTTGCTGTGATGAACTCCACGTCTTTGTTCAGAGGTATGTGAATACTGAGAAAAAACAGCTGGAGGTGCAGAAGACCAGTGAAACATATTTACTGCATCTCTTCCGATTAACAAACACCTGTAGGCACCTAAGGTTTTATGCTTTGACTATTATGGAAGCAGACAACAACAGAGACTCTGCCACTGTTCAGATGTTAAAGAACATGGAGGCTCAGGTTTCAGTTTGTCTACAGAAGTGGATTTCAGGCATAGCTGAGGAGCATCTAAAGAAGTATTTCGAGGAACAGGATGCCACTTACACAGATTATTGGAAAATATccagaaaaatatttacatCTCTTGTTCAAATAGAAACCATGGAGAGGAAACAAAAAACAGTATTCAAAGCAGAAGATCCTTACACTCTATCAGGACAACATCTCCACAGCACTACAGGGGTCCTGCTGTACAATGAGGCTAAATGTGATTACAGCAAGGAGGAGGAactcattaaaatacatttagatgtTCTTCAGTGTCTCAATGGTGCTGTTGAGGAGACAAAAACCATCAGCCCCATTCTGATGACAGCTGTTCAACAAATTTGCTGTGATGAACTCCACGTCTTTGTTCAGAGGTATGTGAATACTGAGAAAAAACAGCTGGAGGTGCAGAAGCCCAGTGAAACATATTTACTGCATCTCTTCCGATTAACAAACACCTGTAGGCACCTAAGGTTTTATGCTTTGACTATTATGGAAGCAGACAACAACAGAGACTCGGCCACTGTTCAGATGTTAAAGAACATGGAGGCTCAGGTTTCAGTTTGTCTACAGAAGTGGATTTCAGGCATAGCTGAGGAGCATCTAAAGAAGTATTTCGAGGAACAGGATGCCCACTTAAACAGATTATTGgaaaatatcagaaaaatatTTACATCTCTTGTTCAAATAGGAAACCATGGAGAGGAAACAAAAACAGACATTGTGAATGTAGCGTACCAGAGCGTAACTAGAGCTTACCTGCGGTGTCTGGTAAAGAGGAAATGCAAAAAGTTAGAAAAAAGGTGGGGAGTCGTTGACAAGCAGATGATGAGGGATGCTGAACTGTTTCACGATGTCTTCCTAAAACAGGGTACCAGTTGTAATGGGCAGAAAACGTTTCTGCTGAAGATGAGTGAAATTGTAGGTACTACTGATGTAGAGAGTCTAAAGCTTGACTGTGCAGCTCTGTGCAAAAACTTCCCTAAGGAGAGCAAAGAACACCTACCTGCCCTGCTGAAGTGGAAACGGAGATTGTCAAATTCGCAGAGGAATAAAATACTAGCGGCCAGTAAAGAGGCCTTTCAAAATGGAGATGATTTTACTACCTGCTCCCAGTGGTGGAGCTACTGCCTCTGCTGCACGTGATGACAGCAACCTTATTAGTATCAAGGAGAACTAATGAAATGGTCAGTGATCAGATATATTTCAGACCAAACATTGAACAGGCCTTTCCTACTGCTGTGTGATGAAGATGTGATGAAGCTGTTGCCTGAAAAAGTGGTTATGGCTGAATATACTTAActatttaagtgttttatttgttattttatgttgcatttgtttaatgaaaaaaaatatattatataacagtaGCAGTAAAGTTATACAAAGAAATTGGGCTTTAAGCTAATAGGAATTTTTTATAATAGATTTCCAGGAATGAAGATTCCAAATTTTGTAGATTGTTTAGGAATTCTGTGGAAGTGTTTTAATTACTTCAGTTGTCAGTACTGACATTCCTGTTATTTCtgatattatgtatttattatttattagatacatatatttaatatgtatttaatgtatatatttatttttaaatgtatgtttatattGATGGTACTATAGTAGTCCTAGTGTTTAAAGACTCCTGATATGGTTTGGCTATGTCTTTTCTACTACATTACTGCAGGTCCTGAGTAGATGAACTTCTGCTTTGACATTTTTCTGTCACTGACATAGATTGGTACCTGgagtttacattttaaagacaaaatCAATCACATACAGGTGATAAAAGTGCTTCACTGTTAttaaaacctctgtttacacaGTTGTACTGACTATGTTTACAGGTATACCAGATATATGtctatttactgtgtactttgaTTAAGGCAGGCTGCTTTCTGTACACAATGTGTCAGCGTCCGttttgcttaaataaaaaaatgtttacattacattgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296231 False 306 lncRNA 0.37 1 22038459 22038764
XM_022684450.1 True 3887 mRNA 0.40 15 22038423 22045112

Neighbor

gene id symbol gene type direction distance location
LOC103023885 NA coding downstream 48394 21968779 ~ 21990029 (-)
LOC103024928 NA coding downstream 76770 21951877 ~ 21961653 (-)
ninl ninl,LOC108263056 coding downstream 234674 21771507 ~ 21803749 (-)
gbf1 gbf1 coding downstream 336399 21605304 ~ 21702024 (-)
LOC103029456 col13a1 coding downstream 520023 21363752 ~ 21518400 (-)
LOC103021922 ckb,kcrb,LOC108444021,LOC107698148,LOC108263462 coding upstream 54469 22099581 ~ 22106482 (-)
bag5 bag5,LOC107698150,LOC107708429 coding upstream 98365 22143477 ~ 22161588 (-)
ttl ttl,LOC107678537,LOC107698152 coding upstream 177428 22222540 ~ 22233232 (-)
ikzf1 ikzf1,LOC107698154,LOC107721232,LOC107708437,LOC107589539 coding upstream 205620 22250732 ~ 22274892 (-)
spata48 NA coding upstream 239440 22284552 ~ 22296772 (-)
G218314 exoc3l4 non-coding downstream 20606 22013475 ~ 22017817 (-)
G218307 NA non-coding downstream 43210 21994819 ~ 21995213 (-)
G218273 NA non-coding downstream 86630 21951443 ~ 21951793 (-)
G218266 NA non-coding downstream 109633 21927468 ~ 21928790 (-)
G218261 NA non-coding downstream 151826 21886210 ~ 21886597 (-)
G218369 NA non-coding upstream 15933 22061045 ~ 22061924 (-)
G218370 mark3 non-coding upstream 39063 22084175 ~ 22091958 (-)
G218371 mark3 non-coding upstream 43083 22088195 ~ 22097788 (-)
G218374 NA non-coding upstream 54030 22099142 ~ 22099395 (-)
G218376 trmt61a,LOC107582491,LOC107698149,LOC107678528,LOC107589545 non-coding upstream 64063 22109175 ~ 22120063 (-)
G218240 NA other downstream 183282 21851372 ~ 21855141 (-)
LOC111195999 NA other downstream 281015 21708787 ~ 21757408 (-)
LOC103031576 cisd1,LOC105902329,LOC108443718,LOC107549159,LOC107747252,LOC107665600 other downstream 831597 21160374 ~ 21206826 (-)
G217886 NA other downstream 1956064 20081312 ~ 20082359 (-)
LOC103036840 crtac1,LOC108443504,LOC107665558,LOC107702729 other downstream 2163232 19822618 ~ 19875191 (-)
G218329 eif5,LOC107589547 other upstream 6777 22051889 ~ 22056493 (-)
G218545 NA other upstream 799721 22844833 ~ 22846205 (-)
march8 march8 other upstream 1409063 23454175 ~ 23656986 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other upstream 1790667 23835779 ~ 23849800 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other upstream 1805851 23850963 ~ 23857507 (-)

Expression


Co-expression Network