G218331 (ckb,ckba,kcrb,LOC108444021,LOC107735686,LOC108434982,LOC107698148)


Basic Information

Item Value
gene id G218331
gene name ckb,ckba,kcrb,LOC108444021,LOC107735686,LOC108434982,LOC107698148
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22099516 ~ 22106537 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296246
CTTAACCAGCTGTTTTAATGGGTGACTGATGCAGGTGTTTTGAAGAGACAGACAGTAGGCATCTATATTGGTCTTTCATGAATCTTTTATTCTCTCATTATGCCACCATAACGAAAGGTCCCCAGTGGGTGAGGCAGAGGGGAAGCGGcttaaataaaacatgcaaTCATGGATGGAGTCAACATACATTCTTTCGTTCTTATTGAAGGAGTGGAATGTGGGAAGGGAATGGGGagaaaagtgaggtagagggtgGACTGGCTGGGTTTACTTCTGGGCGGGCATGAGGTCATCGATGGACTGGCCTTTCTCCAGTCTCTTCTCCATCTCTATAAGCAGCTTGACTCCATCTACGACCATCTGAACCAGCTCCACCTCTGAGAACCCCAGACGGTCAGCGTTGGAGATATCGAATACGCCGCCTACAGCAGCGGTGTCCACACCACCTGTTCCACGTTTTTGGAGCCTCAGTTTCTTCAGGATCTCCTCAAACTTGCTGTGTTTGCTCACGTTGGGAAGTTTGACATGCACTCCACCACGCAGTCCTGTGCCCAGGTTAGATGGGCAGGTAAGGACGTAACCAAGGTGTTCGTTCCACATAAATGAATGTCCCTTGTTTTTGAACAGCTCCTCGATCTGTACGAACAAACGTCAGTAAAAATTATTCAGTGCTATTCTCTAGAGATCAATGCCC
>TU296248
CTTAACCAGCTGTTTTAATGGGTGACTGATGCAGGTGTTTTGAAGAGACAGACAGTAGGCATCTATATTGGTCTTTCATGAATCTTTTATTCTCTCATTATGCCACCATAACGAAAGGTCCCCAGTGGGTGAGGCAGAGGGGAAGCGGcttaaataaaacatgcaaTCATGGATGGAGTCAACATACATTCTTTCGTTCTTATTGAAGGAGTGGAATGTGGGAAGGGAATGGGGagaaaagtgaggtagagggtgGACTGGCTGGGTTTACTTCTGGGCGGGCATGAGGTCATCGATGGACTGGCCTTTCTCCAGTCTCTTCTCCATCTCTATAAGCAGCTTGACTCCATCTACGACCATCTGAACCAGCTCCACCTCTGAGAACCCCAGACGGTCAGCGTTGGAGATATCGAATACGCCGCCTACAGCAGCGGTGTCCACACCACCTGTTCCACGTTTTTGGAGCCTCAGTTTCTTCAGGATCTCCTCAAACTTGCTGTGTTTGCTCACGTTGGGAAGTTTGACATGCACTCCACCACGCAGTCCTGTGCCCAGGTTAGATGGGCAGGTAAGGACGTAACCAAGGTGTTCGTTCCACATAAATGAATGTCCCTTGTTTTTGAACAGCTCCTCGATTTGGTAAGGCCTGTGCAGAAACGATTGAAGACTTCCTTCATGTTCCCTCCTTTCTGCATTGAGATGACACGCAAGTGATCCTCCTCATTTACCCACACCAGGAATGTCTTGCTGTCGTTGTGCAGATGCCTCTGGCATCAGGCCAATCACGTGCCATTCCAGAGGCCAGCAGCAGAGGGGAGACTGGTTTGTCAAAAAGGAAGTGATCGTCAATGAGCTGCTGTTGCTCTGCTTCTGTCATGTTTTTCAGAGCATAGTACTTCCCTTTCAGATCTCCACTGAGAGAGCCCAaagctgaaaaagagagagagagaaagagagagtgatgaaGTTTAtgctaatcattttaaaaatgcttgtttttattactgtaaattattGAAGAAGAGCAACATACATCTTTACATCACATATTGAACAGTTATTTGTGCGGCCCTGTTTCTATGTATCTCAAGTATTCTTTGGCACACTTAATCAACAGGAAACTGGCTTCTTTAGCTCTAAAGGAAATATGACCTCATGTCTGTCCCACAGTACAACTGCGATACAGAACATGCATAGAAAATCCAAGCGAAATTTAAATGGTGGTTGATGTTTCACCAGATATACAAAGC
>TU296249
CTGACTGTACCTGGGTTATCCACGCCGGTCTGAATCACATCGTCCAGTGTGAAGCCGCTGGGTGTCTGCTTGCTGCGCAGCCGCTCGTACATGGCCGGAGTGAGCACCTTGGCCATGTGGTTGTTGTGCTTGCTGAGGTCGGGGTACTCCGCTTCGGATGAGTACTTCATCTTCAGCTGGTTGTGAGTGTTTCCGAAAGGCATGGTGGATGCTGGCTGTGGACTACTACTACTAGATGAAGACGGGGCTGACACAAAGATCCCTATGTTTCCGGCTGGGGAGTGCTCACTGCAAGCTCACTCTGCTCTCTAGGGCTTGACTCTGATGGAGCATTTGCTTTATACTACATAAGAGCGTCTCCTATTGGCTACTATTTGCAGTACATTT

Function

symbol description
ckba Predicted to enable creatine kinase activity. Predicted to be involved in phosphocreatine biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be active in extracellular space. Is expressed in central nervous system; liver; myotome; and pleuroperitoneal region. Orthologous to human CKB (creatine kinase B).
ckb Enables ubiquitin protein ligase binding activity. Involved in substantia nigra development. Located in cytosol.

NR:

description
creatine kinase B-type

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296246 False 694 lncRNA 0.48 2 22099516 22100317
TU296248 True 1250 lncRNA 0.45 4 22099516 22102481
TU296249 False 387 lncRNA 0.53 2 22105412 22106537

Neighbor

gene id symbol gene type direction distance location
eif5 eif5,LOC108435020 coding upstream 43015 22049119 ~ 22056501 (+)
LOC103023340 NA coding upstream 68076 22024141 ~ 22031440 (+)
LOC103024407 NA coding upstream 88547 21988878 ~ 22010969 (+)
LOC103025447 NA coding upstream 179932 21911958 ~ 21919584 (+)
LOC111196000 NA coding upstream 245096 21851372 ~ 21854420 (+)
trmt61a trmt61a,LOC107582491,LOC107698149,LOC107589545,LOC107678528 coding downstream 1032 22107569 ~ 22120114 (+)
apopt1 apopt1 coding downstream 55528 22162065 ~ 22166393 (+)
klc1 klc1a,klc1,LOC107708436,LOC107698151 coding downstream 62947 22169484 ~ 22204214 (+)
fignl1 fignl1 coding downstream 134156 22240693 ~ 22244448 (+)
mocos mocos coding downstream 299268 22405805 ~ 22419342 (+)
G218298 exoc3l4 non-coding upstream 81699 22012145 ~ 22017817 (+)
G218286 NA non-coding upstream 134483 21964494 ~ 21965033 (+)
G218285 NA non-coding upstream 135091 21964159 ~ 21964425 (+)
G218279 NA non-coding upstream 143108 21956027 ~ 21956408 (+)
LOC111196027 NA non-coding upstream 154714 21941514 ~ 21944802 (+)
G218335 NA non-coding downstream 31326 22137863 ~ 22143176 (+)
G218348 NA non-coding downstream 117037 22223574 ~ 22268752 (+)
G218364 NA non-coding downstream 165353 22271890 ~ 22285011 (+)
G218421 NA non-coding downstream 289555 22396092 ~ 22399515 (+)
G218434 NA non-coding downstream 319590 22426127 ~ 22426436 (+)
mark3 mark3 other upstream 1257 22060963 ~ 22098259 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other upstream 1683873 20335947 ~ 20415643 (+)
G217874 nkx2-3 other upstream 2025173 20020414 ~ 20074343 (+)
rrp12 rrp12,LOC106529656 other upstream 2754112 19323906 ~ 19345404 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other upstream 2882527 19160653 ~ 19216989 (+)
G218351 NA other downstream 110762 22217299 ~ 22218860 (+)
kcnma1 kcnma1,LOC108263740 other downstream 457261 22563798 ~ 22818114 (+)
G218651 NA other downstream 1590040 23696577 ~ 23708243 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other downstream 1874598 23981135 ~ 24028981 (+)
G218758 NA other downstream 1952674 24059211 ~ 24063788 (+)

Expression


Co-expression Network