G218335


Basic Information

Item Value
gene id G218335
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22137863 ~ 22143176 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296254
agcGTGTACAAACTCCAGACAGCACACAAAGTAAGCCTGGCACAATCAACAATGTCTCAATCAGTTCACAAATTGTGTGGAACATAGAGAAAACCATTCTGTAAACGTCACCATTTAAACACATTCTTCTTCATACGAGAAAAAGACGGAATTGAGGAAATCAATCGTTTTAATAAGTAGATTATaccagcagttttttttttgtttgtttcattgtcTACGATGACACCGAGTTGCCCTTTATAATTATGCAAGGTTATGAACAGGGAAGATCACAATCAGCTTTGGTATGCCACAAAGTTAGGACATTCTTCATTACATTCTGAAGGTGAAGAAGTGTAACTGAAGGTTTCTGCTGTTTGTGTGATATGCTGTCATGTCCATGACCTTCAGTCTGGTATAGAAAAGTAGGGAAGGGAAAAGAAAAGGATTAACTtaaagtgctttaaataaatacatcagacCTCCGTCTCTCAGTTTTTACACATGACACTGGACTGTATCATGTCTAATTGATGCTCTAACATTGTTGAGTGGTGTACTTGTGGGCCTTCTGATTCATTTGCTGAATTAATGAACCAACTGGAATTTAATTCAAAAAGCTCCAAACCTCTAACGACATCTAAATACGAAgctttgctttaaaaaatactgGCCTCATTTATTAGCCTGAACCATGCAACCTGCCATCAAACAGAAAGTGTCATATAGGGAGCAATTCATAGTCCTAAATAAGCCAGCACAGCAAGTGAGCACATTAATGTCACCAGTGTGCCATCTGAGTGAGTTTTTAGCACCACATCAGACATATCATcacccacaaacacacccacTGGCCCACGCAGCTGCTAATAAATCCAAGTGTTAATTTGGGAATTCAGTGCTGGGAAGCTACTGTTCTAAAATACAAAGACTATGCTGCAGAATCTGAAGTAACACTTATACACAGTTAAGTCAGAATATGATGATGTTAAtattcttgtttctacactaaTTTTGCATCAAGCACGTAGGCTTACTTTGTAATCATTTGTTTCACtcatttgatattttattatctattatccTCTTTTCACCTTGtttttcaatggtcaggaccccacagggccaccacagagcagctattattggGGTGGTGGTTCATTCTCAGCAATCCAATAACACTGGCAAGGTGCTggtgtgagtggatcagacacagcagtgctgctggagtttttaaacacaaatagTTCAAATAGTTCACCAATTAGAGATATCCAACCAACAACATCCTCgaggcagcgtcctgtgggcactAATGAAGCACAAGAGGATGGCCAACACAAACAGTGTAGCAACAGATCACAGAGCTTATGTCTCTAAATTAACATTTCCAAGATGGAACAGCTAGAAAGGAGTGTGAGTGGACACAGTTTTTAAACGCTACATCAgcactggtgaaaaaaaaaatataatgtgtATAGAAACAAGGATGTGGTCGTAATAATATTCTGAGTGAACTGTGTAAAGCAAACTTCTGTATAGTAACAGAAGGATGAATAAGAAACAGCTTATTTTTTGACTGACTAAAGGATAATCCTTTATTCAACCCTATGCATGATTTCATTACATCAGAATCAATAGAAACCCATTTTAGTATTACCTAAAAATGAATCTCTGTCTAGCCTTGATATTCATCAAAGCACTCCCTCGCTGACTAAATTAAAAGAgccacaaagacttgctgtagTCTTGAACAGGAACTGGGTCACTACTTTGTAGTCTGAGAGTCAAAACAAGCCATCCTCAGATTACCTCAAATTGATTGTAACCATAGCGATGGTTTTACTGAGATGACTCACGTAAACAGAGAGTGCACGAAACCTCAGAGTGAGAAATTTCATTTCTAAAATCAGTTTCACAACCAGAAGTGGGCTTGAGTTGTGCCTAATTTTGTAAGAGTTCCTGTGAAGCAGTGGGTTAAACTGACATGTTGTGGGATGTGATGGAAAAACAGCATGGCTATCATAAGTACTGAAAGTGAGTTTAGTGTGCCTGAACACAAACCACCTTCACAGTTATTGGCACTGGAAATATGTAGCACACGTTTGTAGGTTACCGCTGCGTGGGTCTAGGGAGACTTTACACAACTGCTCAACTGGAAGTGAGGTGCAAACTTACCAAACAATACAAACATTACTGTAATCGTGCAGTCCATGAGTGTTTGGGTCTCGACTTCCAGAAAACGGGTCTGCATCCAAATTGCTGATGTACTGCACAGACAGTGTAATTAGTCCTGTCTAATTGAATGAAGTGCAGGACATTTACAAtgaaaattattgtatttaaattactagatatacagatagatatagatatacagctctgaaaaaatgggagaccacttcaaaataataagtttctttgattttaccaaattaaaaacatctagaatataatcaagaggaagatggatgatcacaagccatcaaactaaactgagctgcttgactttttgcaccaggagtgtgtaagcagtgtgtaagactggtggaggagaacatgccaagaaaactgtgattaaaaaacagggttattcctccaaatactgttttctgaactcttagttagtataaacttgttttctttgcattatttaaggtttgaaagcactgtccttttttcattatttttgaccatttctcattttctgcaaataaatgctctaaatgactatttttatttggaattttagtttatagaataaaacaacaatgttaattttatttaaacatatacctataaatagcaaaatcagagaaactgattcagttctcttaacatttctgtaaattgcttgtaaaaaaaactgacttgtTCTAAGTATGTACCGTGGATATTTGAATTTACTCAACTTTGAAACTTTTATTTGTACTACATATTAAGCATTTGTAATTAGTACGCAATTGTGGTGTAGCCTGAGACATTTCGACTAACTGACCactatggaaaaaaatacaaataaacgtTAGACAACACATTAGGAAATGACAGGATATGATAAAGACAAAAGCTGATCAACAGACCAAAGGCCAGTGAACTTATCCagccttctttttttattatgtcttaATTTGTCCATTCTTTCTAGCTGTGTGTGATCACGCGTTTCTCTTAAATGTGGAGAACCTATTTTGGGTCGACTCCAAATGTGACCCCATTTTGCTTGAGACTGGTAGCCTCCTTTCACAAAGAGTAGTGCCATGCAGGGCATCTGGAACATGGCCGAAGTCAGCACTCAATACAGGACTGCCACTGCTCGAGCTGTAATTGGGTAGAATGTTGCTGAAATCTATCGATCGTACTTGCAGCCTGAAGGAGCAGTCAGTGAAAGGCGCCATCAATAAGCTTAAGAGCAGAAAGCTCTGACTGCACACTACAGCCTGgctgatataaaaaattgcGGATTAAAAATTTTGGGGCTAAACATTCAgttaagcaataataataaaaaagatgattGTATCTTTTGATCTCAAATCCATTAGTTTTAGTTAAACAGTGCAGACTGACATACAATCGtcagttttttattatatatttgtttatcttgGGATCCCATGAATCCCaagaagaagcaaaaaaaaaaaaaaaaaaaaagtttttattttttaaacctttcataacactaaatatatgaCTAGTGGGTTTCCAATAAGGGTGCACCCTGTTGTTATACAGTCTTGAACAATCAACAGTAACAATAAGTGCATCATCAGTGAGTGTGCCAACATGTGCTTCACAAGCAGATTACTACGGAACATCAGAGTTTGTAATCAGTCAGTAATCTGTTCAATGTGATTACATGAAATTATCTGAAATAATCAGataatgggatttttttttgtattgcaaTAAACTGGTGTATGATGTAAATGTCATGTAAAACCTAAAAACCTCAAGCCActgcttttttttgcattagtcACAATATGAAGATTATTTGAATCCTTAAATTTTAGCATTGCTTCGAAAGTGTTTTGTCGCCATCTCGTGGCTGCAGTGGTAAAAGATGCTTTCTTACTTCCAGGTCTGTTTTCGTGCATGCACAGACTGAgaaatctgaagaaaaaaaaatcaaattaaaagtaTATACTGCCTGAGAAATAATGATTACTGACctaaaatccagctctcttCATTGTATATTTAAACTTAGATCTAAGAATTTGGAGTATGCTGTTTTTAGTGCATGTAAATCCACTCAATCTTATCTTCAGGGCTCTACTACAGGGAGAAActactaaataaataagcaaatcatCTTAATTATAACACAGGTTCCTTCCCGATCAGTCTCAAGTGCAAATTTATGCCACATTATAAGCCATGGCATGCAATACAACCCCCAAAGGCCTTGTGCTTATGatgaatatttaaacatatgaaaCTGACACTCACGCTCTGGTTTTCATGACCAATATTCACACCCTTCTGCAGTGTCTCAGAAGCTCATACAGATTCATTAGAGCTGTGTATTTGaataagagacagagagataatgatgataaagGAGAGGAGAGTAATTGGGCAAAGCTGCTGAGAGGCTGATGTGCTAATCTGATGGAACTGCAGCAATGACTCACTGACCACCAGGAAATACTGCCGTGACCTCACAGCTGGAGGTGGTGACTGATCCCTAACGTAAGTAACCATGACAACCCTGACCATTTGAGCAAGGAAAAGGGGGCATAAagatttttatgcttttttttaatagcccATCACCCTCTCCCACTCCTATGCAgaatgttctagaatgttctagaAAGCCTGTCTGCTTTGATCACCATCATGcccaaaaataaaacagccacacacacacacacttatccaTCCACACACCACTGTTCCCAGGAGGCTTTGAGACACACTTTTCTTCTCCTAACAATGACAACCAGTAGAGACGACAAGAAAAGCCTTCAGCCCTTTTCTTTCTACACTGACATCTTCTTGCAGGCCAGAAAACTGGCTGTATAACACTTAAGCTgacaaacaacaaataaacacatttcaccCACCCCTTCTCTATTAAATCACCCTTAAAACTGCATCATATGGAACAAACAGAAGACAGCTTGGGTCTCAATTTGAAGAATTGATTTTCTCCAACTAATCTCTTTGTGACAGAGCTCAGGGCCTGTCCACTCAACTCTCCCTCTCCCACGCTGCTCCTCATACATCTCCCACACTGTATTTTCCAAGATCTACTCTGAATGTGTGCCTtgagttaagaataaataaataaatactaaaaaaggtcaaatgtaagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296254 True 5314 lncRNA 0.38 1 22137863 22143176

Neighbor

gene id symbol gene type direction distance location
trmt61a trmt61a,LOC107582491,LOC107698149,LOC107589545,LOC107678528 coding upstream 17749 22107569 ~ 22120114 (+)
eif5 eif5,LOC108435020 coding upstream 81362 22049119 ~ 22056501 (+)
LOC103023340 NA coding upstream 106423 22024141 ~ 22031440 (+)
LOC103024407 NA coding upstream 126894 21988878 ~ 22010969 (+)
LOC103025447 NA coding upstream 218279 21911958 ~ 21919584 (+)
apopt1 apopt1 coding downstream 18889 22162065 ~ 22166393 (+)
klc1 klc1a,klc1,LOC107708436,LOC107698151 coding downstream 26308 22169484 ~ 22204214 (+)
fignl1 fignl1 coding downstream 97517 22240693 ~ 22244448 (+)
mocos mocos coding downstream 262629 22405805 ~ 22419342 (+)
anxa11 anxa11,LOC108263209,LOC107708439,LOC107678500 coding downstream 286466 22429642 ~ 22451937 (+)
G218331 ckb,ckba,kcrb,LOC108444021,LOC107735686,LOC108434982,LOC107698148 non-coding upstream 31326 22099516 ~ 22106537 (+)
G218298 exoc3l4 non-coding upstream 120046 22012145 ~ 22017817 (+)
G218286 NA non-coding upstream 172830 21964494 ~ 21965033 (+)
G218285 NA non-coding upstream 173438 21964159 ~ 21964425 (+)
G218279 NA non-coding upstream 181455 21956027 ~ 21956408 (+)
G218348 NA non-coding downstream 80398 22223574 ~ 22268752 (+)
G218364 NA non-coding downstream 128714 22271890 ~ 22285011 (+)
G218421 NA non-coding downstream 252916 22396092 ~ 22399515 (+)
G218434 NA non-coding downstream 282951 22426127 ~ 22426436 (+)
G218450 NA non-coding downstream 309779 22452955 ~ 22453182 (+)
mark3 mark3 other upstream 39604 22060963 ~ 22098259 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other upstream 1722220 20335947 ~ 20415643 (+)
G217874 nkx2-3 other upstream 2063520 20020414 ~ 20074343 (+)
rrp12 rrp12,LOC106529656 other upstream 2792459 19323906 ~ 19345404 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other upstream 2920874 19160653 ~ 19216989 (+)
G218351 NA other downstream 74123 22217299 ~ 22218860 (+)
kcnma1 kcnma1,LOC108263740 other downstream 420622 22563798 ~ 22818114 (+)
G218651 NA other downstream 1553401 23696577 ~ 23708243 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other downstream 1837959 23981135 ~ 24028981 (+)
G218758 NA other downstream 1916035 24059211 ~ 24063788 (+)

Expression


Co-expression Network