G218351


Basic Information

Item Value
gene id G218351
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22217299 ~ 22218860 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296278
gagatgcccaaaaggacacttggagatgcccaaaaggacacttggagacgcccaaaaggacacttggaaatgcccaaagtgacacttggaggtgcccaaaaggacacttggagatgccctaaaggacacttggagacgtccaaagggacaaattgagatgcccaaaaggacacttggagatgcccaaaaggacacttggacacgcccaaaaggacatttggagatgcacaaagggacacttggacaCGCCCAAAAGGACACGTGGACACGCCCAAAAGGACTCTTGGACacgcccaaaaggacacttggagatgtccaaagggacaaattgagatgcccaaaaggacacttggagatgcccaaaaggacacttggagacgcccaaaaggacacttggagatgcccaaagggacacttggagatgcccaaaaggacacttgaagatgtcccaaagggacacttgaagatttcccaaagggacacttggagatgcccaaaaagacactgggagatgcccaaaag
>TU296281
gagatgcccaaaaggacacttggagatgtccaaagggacaaattgagatgcccaaaaggacacttggagatgcccaaaaggacacttggacacgcccaaaaggacatttggagatgcacaaagggacacttggacaCGCCCAAAAGGACACGTGGACACGCCCAAAAGGACTCTTGGACacgcccaaaaggacacttggagatgtccaaagggacaaattgagatgcccaaaaggacacttggagatgcccaaaaggacacttggagacgcccaaaaggacacttggagatgcccaaagggacacttggagatgcccaaaaggacacttgaagatgtcccaaagggacacttgaagatttcccaaagggacacttggagatgcccaaaaagacactgggagatgcccaaaag
>TU296282
gagatgcccaaaaggacacttggagatgcccaaaaggacacttggagacgcccaaaaggacacttggaaatgcccaaagtgacacttggagatgcccaaaaggacacttggagacgcccaaagggacacttggagatgcccaaaaagacacttggagatgcccaaaaggacacttggagatgcccaaaaggacacttggagacgccCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296278 True 522 TUCP 0.50 4 22217299 22218860
TU296281 False 412 TUCP 0.50 2 22218117 22218860
TU296282 False 208 lncRNA 0.51 2 22217299 22217594

Neighbor

gene id symbol gene type direction distance location
klc1 klc1a,klc1,LOC107708436,LOC107698151 coding upstream 13085 22169484 ~ 22204214 (+)
apopt1 apopt1 coding upstream 50906 22162065 ~ 22166393 (+)
trmt61a trmt61a,LOC107582491,LOC107698149,LOC107589545,LOC107678528 coding upstream 97185 22107569 ~ 22120114 (+)
eif5 eif5,LOC108435020 coding upstream 160798 22049119 ~ 22056501 (+)
LOC103023340 NA coding upstream 185859 22024141 ~ 22031440 (+)
fignl1 fignl1 coding downstream 21833 22240693 ~ 22244448 (+)
mocos mocos coding downstream 186945 22405805 ~ 22419342 (+)
anxa11 anxa11,LOC108263209,LOC107708439,LOC107678500 coding downstream 210782 22429642 ~ 22451937 (+)
dlg5 dlg5,LOC107708441 coding downstream 247618 22466478 ~ 22553458 (+)
znf503 znf503,LOC103355656 coding downstream 1073250 23292110 ~ 23295682 (+)
G218335 NA non-coding upstream 74123 22137863 ~ 22143176 (+)
G218331 ckb,ckba,kcrb,LOC108444021,LOC107735686,LOC108434982,LOC107698148 non-coding upstream 110762 22099516 ~ 22106537 (+)
G218298 exoc3l4 non-coding upstream 199482 22012145 ~ 22017817 (+)
G218286 NA non-coding upstream 252266 21964494 ~ 21965033 (+)
G218285 NA non-coding upstream 252874 21964159 ~ 21964425 (+)
G218348 NA non-coding downstream 4714 22223574 ~ 22268752 (+)
G218364 NA non-coding downstream 53030 22271890 ~ 22285011 (+)
G218421 NA non-coding downstream 177232 22396092 ~ 22399515 (+)
G218434 NA non-coding downstream 207267 22426127 ~ 22426436 (+)
G218450 NA non-coding downstream 234095 22452955 ~ 22453182 (+)
mark3 mark3 other upstream 119040 22060963 ~ 22098259 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other upstream 1801656 20335947 ~ 20415643 (+)
G217874 nkx2-3 other upstream 2142956 20020414 ~ 20074343 (+)
rrp12 rrp12,LOC106529656 other upstream 2871895 19323906 ~ 19345404 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other upstream 3000310 19160653 ~ 19216989 (+)
kcnma1 kcnma1,LOC108263740 other downstream 344938 22563798 ~ 22818114 (+)
G218651 NA other downstream 1477717 23696577 ~ 23708243 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other downstream 1762275 23981135 ~ 24028981 (+)
G218758 NA other downstream 1840351 24059211 ~ 24063788 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other downstream 1845635 24064495 ~ 24071626 (+)

Expression


Co-expression Network