G218386 (apopt1,LOC107582494,LOC107698146,LOC107721215)


Basic Information

Item Value
gene id G218386
gene name apopt1,LOC107582494,LOC107698146,LOC107721215
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22164760 ~ 22166393 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296351
TGGCCAcagtataatattttaatatgaaatCTTAAATATTTACAGCGATATTTTGTCTCCTTATGAACAACCATCGACAAGTGAACAGAGAAAACTGATTGACAGTGTCTTTATTTGGGCATTGCAGTAGGTTTGCTTTTACTTCGTGCTTGACCAGTTAGGGTTCTCCGCAGGTTGTGCAGAGCTACTTTGGCCATGAGGATTGTGATGGTGAAGTTTCGTCTGTACCATTCTTTGTTATAGCTTTCATGGTTTTTATAGTTTCTGTCAAGGAAGTATTTGTAGAAGACTGCCATTTCCTCACTACTTAAGGTCCTTCTTCGCCCGTTCTCGTCCCTTGCAGTCAATCCCTTTGCCTTCAGTTGTGATTGTACATATTCTTCTTTTTCCTTGCTAAACGTGACATTCTGATGCTtccagaattcatggttccaatCCTCTGTTTCCTGTCTCAGATGCCTCAGTCTCCTCTCCAGCTGGGTCTCATTCTCTGGGATGTGATAAATGATGGGCCGTAAATTTGACAGTCTGTCTGGTGGCCCGATCCAGTCATACTTCGAGGTGGGGCCTGGTTTGAATTTGATGTTCTTAATAAAattagatacaaaaaaaaagaacgttTAGACAGTGGATATAAAATACCTAAAT

Function

symbol description
apopt1 apoptogenic protein 1

NR:

description
apoptogenic protein 1, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296351 True 648 lncRNA 0.40 4 22164760 22166393

Neighbor

gene id symbol gene type direction distance location
bag5 bag5,LOC107698150,LOC107708429 coding downstream 3172 22143477 ~ 22161588 (-)
LOC103021922 ckb,kcrb,LOC108444021,LOC107698148,LOC108263462 coding downstream 58278 22099581 ~ 22106482 (-)
LOC103023885 NA coding downstream 174731 21968779 ~ 21990029 (-)
LOC103024928 NA coding downstream 203107 21951877 ~ 21961653 (-)
ninl ninl,LOC108263056 coding downstream 361011 21771507 ~ 21803749 (-)
ttl ttl,LOC107678537,LOC107698152 coding upstream 56147 22222540 ~ 22233232 (-)
ikzf1 ikzf1,LOC107698154,LOC107721232,LOC107708437,LOC107589539 coding upstream 84339 22250732 ~ 22274892 (-)
spata48 NA coding upstream 118159 22284552 ~ 22296772 (-)
vwc2 vwc2,LOC107589538,LOC107678488,LOC107698155,LOC107721217 coding upstream 161750 22328143 ~ 22359613 (-)
LOC103042035 zgc:110045,LOC108444131,LOC107582498,LOC107721227,LOC107678543,LOC107708438,LOC108262845,LOC107698144 coding upstream 212730 22379123 ~ 22394920 (-)
G218376 trmt61a,LOC107582491,LOC107698149,LOC107678528,LOC107589545 non-coding downstream 44697 22109175 ~ 22120063 (-)
G218374 NA non-coding downstream 65365 22099142 ~ 22099395 (-)
G218371 mark3 non-coding downstream 66972 22088195 ~ 22097788 (-)
G218370 mark3 non-coding downstream 72802 22084175 ~ 22091958 (-)
G218369 NA non-coding downstream 102836 22061045 ~ 22061924 (-)
G218387 klc1 non-coding upstream 12995 22179388 ~ 22189591 (-)
G218388 NA non-coding upstream 35760 22202153 ~ 22204463 (-)
G218423 NA non-coding upstream 229699 22396092 ~ 22399546 (-)
G218435 NA non-coding upstream 239568 22405961 ~ 22407749 (-)
G218441 NA non-coding upstream 250505 22416898 ~ 22419373 (-)
G218329 eif5,LOC107589547 other downstream 108267 22051889 ~ 22056493 (-)
LOC103022835 NA other downstream 119648 22038423 ~ 22045112 (-)
G218240 NA other downstream 309619 21851372 ~ 21855141 (-)
LOC111195999 NA other downstream 407352 21708787 ~ 21757408 (-)
LOC103031576 cisd1,LOC105902329,LOC108443718,LOC107549159,LOC107747252,LOC107665600 other downstream 957934 21160374 ~ 21206826 (-)
G218545 NA other upstream 678440 22844833 ~ 22846205 (-)
march8 march8 other upstream 1287782 23454175 ~ 23656986 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other upstream 1669386 23835779 ~ 23849800 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other upstream 1684570 23850963 ~ 23857507 (-)
G218781 NA other upstream 1889132 24055525 ~ 24056877 (-)

Expression


Co-expression Network