G218387 (klc1)


Basic Information

Item Value
gene id G218387
gene name klc1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22179388 ~ 22189591 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296353
CCTGTTTTCGGGAACGCATAGCAGCCTCCTCCAGCGTCTCAGCAGCCTCAAACTTGCCCTGCCGTCTGTAGAGAGCACCCAGGTTCTTCAGTGTGGTTGTCACTGTGGGGCTGTCCACTTTGCAGGCCTTGTACCAGCCACCATACTCTCCAAAAGGAGACCCATCCTTCTGCTTGCCCTTGCTCTGTTCTTCTCTCTCCTCCGCATGCATCCAGATGGGTTTGTTCTCATCGTCCACAGAGCCGAACTCCCTCTCGTGTGCTCGCGTGAGGATCTCTTTATACAGAGTCTCTGCTTGCTTGAACTTCCCCTGCTTCAGATAACATGATGCCagattatttttagttttggccACGTTGGGGTCGTCAGGGCCCAGTTTGGTCTGGTAGATCTCCAGCGCTCTCTGGTAATAATATTCCACTTCCTCGTATTTGCCCTGATTCTGACACAGCAAGGCCAGGTTGTTCAGCTGCTTTGCCACATCAGGGTGGTCCTTACCGAGGACCTTCTCTCTGATCTCAAGAGCTCTTTTGCACAGCGGCTCTGCCTCTTTGTATTTCCCTCGCTTGCCATAAAGAACTGCCAAGTTATTCAGTGTCGCCGCCACCGCAGGGTGGTCTTTGCCCAGTGTTTTCTCTCTGATAGCAAGTGCATCGTTCAGAAGGTTTGCAGCCTCTTTGTATTTATTCTGGTCCCTGTAAACGAGGGCGAGGATGTTGAGCATGGTGGCGACATCAGGGTGATCATGCCCTGACGTCTTCTCCAGGTCCTCCAGAGCTTGTTTACACAGGGGTACGGCCACCTCGTAGCGACCTTGAGAGGCATACTGGATGACCAGGTTGTGGAGAGTTCGGAGTCGGGCCGGGATCTCATAGCCTCCCTGCTGCgctgctgctactgcactaCTGTGTGGAGGCTGGACTatagagaaagggagagaaaca

Function

symbol description
klc1 Predicted to enable cytoskeletal motor activity. Predicted to be involved in protein localization to synapse and stress granule disassembly. Predicted to act upstream of or within axo-dendritic transport. Located in membrane. Implicated in Alzheimer's disease and relapsing-remitting multiple sclerosis.

NR:

description
PREDICTED: kinesin light chain 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296353 True 944 lncRNA 0.53 8 22179388 22189591

Neighbor

gene id symbol gene type direction distance location
bag5 bag5,LOC107698150,LOC107708429 coding downstream 17800 22143477 ~ 22161588 (-)
LOC103021922 ckb,kcrb,LOC108444021,LOC107698148,LOC108263462 coding downstream 72906 22099581 ~ 22106482 (-)
LOC103023885 NA coding downstream 189359 21968779 ~ 21990029 (-)
LOC103024928 NA coding downstream 217735 21951877 ~ 21961653 (-)
ninl ninl,LOC108263056 coding downstream 375639 21771507 ~ 21803749 (-)
ttl ttl,LOC107678537,LOC107698152 coding upstream 32949 22222540 ~ 22233232 (-)
ikzf1 ikzf1,LOC107698154,LOC107721232,LOC107708437,LOC107589539 coding upstream 61141 22250732 ~ 22274892 (-)
spata48 NA coding upstream 94961 22284552 ~ 22296772 (-)
vwc2 vwc2,LOC107589538,LOC107678488,LOC107698155,LOC107721217 coding upstream 138552 22328143 ~ 22359613 (-)
LOC103042035 zgc:110045,LOC108444131,LOC107582498,LOC107721227,LOC107678543,LOC107708438,LOC108262845,LOC107698144 coding upstream 189532 22379123 ~ 22394920 (-)
G218386 apopt1,LOC107582494,LOC107698146,LOC107721215 non-coding downstream 12995 22164760 ~ 22166393 (-)
G218376 trmt61a,LOC107582491,LOC107698149,LOC107678528,LOC107589545 non-coding downstream 59325 22109175 ~ 22120063 (-)
G218374 NA non-coding downstream 79993 22099142 ~ 22099395 (-)
G218371 mark3 non-coding downstream 81600 22088195 ~ 22097788 (-)
G218370 mark3 non-coding downstream 87430 22084175 ~ 22091958 (-)
G218388 NA non-coding upstream 12562 22202153 ~ 22204463 (-)
G218423 NA non-coding upstream 206501 22396092 ~ 22399546 (-)
G218435 NA non-coding upstream 216370 22405961 ~ 22407749 (-)
G218441 NA non-coding upstream 227307 22416898 ~ 22419373 (-)
G218448 anxa11,anxa11a,LOC108263209 non-coding upstream 252165 22441756 ~ 22451936 (-)
G218329 eif5,LOC107589547 other downstream 122895 22051889 ~ 22056493 (-)
LOC103022835 NA other downstream 134276 22038423 ~ 22045112 (-)
G218240 NA other downstream 324247 21851372 ~ 21855141 (-)
LOC111195999 NA other downstream 421980 21708787 ~ 21757408 (-)
LOC103031576 cisd1,LOC105902329,LOC108443718,LOC107549159,LOC107747252,LOC107665600 other downstream 972562 21160374 ~ 21206826 (-)
G218545 NA other upstream 655242 22844833 ~ 22846205 (-)
march8 march8 other upstream 1264584 23454175 ~ 23656986 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other upstream 1646188 23835779 ~ 23849800 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other upstream 1661372 23850963 ~ 23857507 (-)
G218781 NA other upstream 1865934 24055525 ~ 24056877 (-)

Expression


Co-expression Network