G218519 (kcnma1)


Basic Information

Item Value
gene id G218519
gene name kcnma1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22809819 ~ 22818104 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296533
TTTAGAACACAAATACATCCATTTTAATTtgagaaaatacaaaaagaaacatGTACAATTTATGTACAAACTTTTTGTACAAGACAGTATATTTATCAGCAGGTTATATTTGACAGAGTCAGGTAGATCAACTCAGCACCATCAATTTCTCCATTTATCCATTAGCTAAAACAGTTCAAACGATTAAATCTTCTATGAGAAACTCCTTTTTCCTGTAATGAATATgccaataattaaatatatgctttattgaaataaaaataaaaaatcatccAAATGCAGTTCAGCTTTTTAAGACTTCATTCCCTCACAGCAGTTTATTCTATACAATTCCTACTTTAGTTTAGTAACACTCAGTCTTTACTGTAGCGTAAAACTGCCAGAAGTACGCAATGCGACAGTGTTGTACGACGTGTATCAGTAAGTTTGCACTTGAAGTTGATATCATTGGGCTAAAACACTCCTGAACAAGTAGACAGGTgttcacaaaataaataaaaaactcaatTAGTGCCCCTGCTGCATCTTTCAGTCAGCGTTAGTCCATCAGTTTATGTCTCACTGCGTTCATTATTTATGGTGGTATGTATTAAAACCACACGTGGTAAAGTTTGTACAGCTGGGCTTATGCATATGTGAATACTTTTTGCCCATTTTGATGCCACTTTTCGCTATAGTGGGTCTTCATGTGTTCCTCCTTTGGGCTGGCCGCACTGCCTGGCACTGCACTGGCATGGAGGCGTGGATAGCTTGGATGTTCTCCATGCCAGTGTTAGACACCTCTGTTCAGTGTGAGTCCTGATTTTAACACATGTCTGAAAGATGCTGCAGAAGAGACACTGTCATGGCACTTTAAACAGTCTGATTAATATGTAGAGGATATCTTTTTACCTTATGATGATCAGCACAAACAGTACAAATCATCTGGGTTTTctgtggatattttttttttggagaagaaTGTCAAGCTGAAGGACGACCACTGTTGATCACTTTGGGGACGGACAGACTGGGGGATAGAAAACGTCCCAAATCTACTGAACGGGTAAAGGTTTGAGATGTGTACCGATTGCTTTTGGTTTGAATGAATCATCCTGCTTAAGGTTGTATTGTCAGGTTTGATTTCTGAGCagtctaaataataaaaaaaaaagataaaacagataaaGAGAACTCTGTAAACAAAATTAGTGACTGTGATAGCTTTAAACAAATGATGAGCGCAGCACTGTAGCAAAACTAAGCCTCAAAAGCTAGCAAAATGGAATGTAAACTCTGACGTTAAAGAATTCACATAAAAATACAGCATGCCTACTGTGAAACTTAAGCTAGACTCCCAATCCCTCTATTATACAGCACTTTCATCAAATGAAACCTGCTTTCAGTGTAATTCTGGAGCTTTTCTTTGTAATGTACCGCAGACGTTTCATTACAGGAAAAGGATCTTACATAGACAAATCAcctataaagaaaataaaagataatttGACTTTGAACTCCAATGTAAAGTGATTTATGATTCATTTTAGGtcagaattctttttttttcaggctaGCAAGTATGTTATTGACAGtccaattttacatacattGTACTCACatcgtttatttttttaagtaactctACTTGCTACAAAAGTGTAACATCAATGTATTCACAATTCAAAATATCACTTCAGGACAAAGCCTAGGTGGCTGCAGTAGGATCATACTACATCCATTAGACAAACATTAAAGCTGAGATCCTTTTTTGTCGGAAAATAAAACGTGGCCTAAAATGGGCAGAATTTACACAACATACTTTGACACTATGCGCTTTTTTTCCACAGTAGATGGAATCGTAGCGATGtcgttttgttattttttttttcttatgtctACAATCATATATGGCTATTGGCTCACTGCTGACCGAGCGTCTCTATAGGTCTTCTTCTCATTGTGCCATCTGAACACACAGACAGTTCCCAGTGTATAATTATAGGTGTATGCACATGAAAATACTTCAGCACAGTCCTCTGAATCCTCTGAAGACCTAATTTAGGTCAATATTAACAACGACAGCGTTCTCAGTTCTACCCTCAGAAAAGAAAGAGTAGGTGCAAACggtaggtgttttttttaacaattgcCCCTCTTCATGCACCCTCTTCTAAGTCAATAGAAGCTTATCACCATCGCTTTTAATTCATTTGAaattaaactattgttttacATCTAAGCACTGTATgaatttcattatatatatatatatatatatatatataaatattaatatatttttatttatctcagccaatgaaaataaaacatagtAGTCTACACAATTTGATAATCGATATAGCTACAAAGGTCCTTCAAAGCAGCCCACGTTTCGAAGCACACTCCTAGGAGAACGAACAAAGAGCTGAGGTTGTACCTTTGTGACTCAGGTTGTCTCCTATAACATAAGCTAGATATGTAGCTCGTCtaatcttgtcttgtctttttttttttgttccttttttgaTAAAGCAATGTGATATGTTCTGTTCCCAAGGGTAAAAATGGACAAACTGAATTGGTGTGCACTGTAGACTTGGTAAGATGCATTTAAGataaatttagaaataaagtTCTTtgatatgtataaaaataagtacaaaatgATTACGCTCATGtggataaaaaataagtatGTACGTACAGTATGTATAAATCTGACAGAACCTTCGAAGCAAAGTCCAAAGGTTCTGCTTAGTATTTGTATACTTCCCACTTAACGTAAAGGCTACACAAGCGTGTTCCAGTCTTGTTAAGTgtagatctagcattcgatccAGTCTACTACACCAAAGCAACACAAAGATATTGTCAAGGTTCACGTCTTTTTGGATGATAACTGACAAACTATGATTGAGCTTGTCTTTTGTATCTGTCTGCTGACCtctttgatctttttttaaggcatCACAGTTAGTCACAGAGAACATCCAAGCATGTCTTTTTTTGCCTCTGTGCCAACAATGTGTCAGGCAGTGGCTTCACTCAAAAGGAGGAACCATGGATGCCCACTTTTCGCAATATGTGGCATATCAAACTGTACTGTCATGtgttttaattaatgattaGCGCATAAGGTCAGCTTTAACAATGTTCCATTGAGACAGAACGTTGGTTAACATATGGTTTAAAAGCTCAATCATagttattatcatcatcattaggATTATTATCAGCAGGTGAGTGCAGTGTGCAatccattcatttcctatggacAACAGATCCACAGGCACCAACACGCATTTGATTCGTTTCCTTAGGCTTCGTTAGGAGCCTTCATCACGCACCACAATTTTTTCCAACCACGGCAAACCAGCAGTCAAGCACGATGGAAAGACGTCAACAAAAGTAGTGCATATCCTCGTAATGTATTGCCAATTTTGTAGGGCTACGTTGGGGACACTCTTTTGCATTATTAGAGAAATATGGCAAATACATTCCCACGTATACGATGGCCTGGATGGTGTGTATGGATGGAAACGAGACCACTTTTCCCTCTCTACATGTCCGAGTTGGGTGACGCAACATTTACTCAGCTGAATGAATGCCCCTGGTGCACAGCCGTCACACTCATTTCCTTGAACGCCACTGTTCCTGCTACACACTGCTAATCCTGCCATGCAGTGAATTCGGAAGGAAAATGAACGTTTTCCGTGATCCAGTGAGCAACCCGGAGCAACATCTGATgttggtgattttttttcttttttttcttcaagttATTTTCGACAATAACTTGATTACGTTTAGTGCAAAAAGAAGCAGATGAGGATGCGTAACTCAAGGAGTGGGGCTTATCTGACGCTTCAGATGAGGTTCTTTGGGTAATGTCAGGATGAGCTGAGTGACTGTGACCCTCATCCTCCATAACACAAACCCTTCTGCACAGAGTCAGGTCACCACAGAAATGAGATATTGCAAAGAATTACAGGAAgtactttttttccattttaacaTAATTTCAAAAAGTGCTAGGGGGCGCTGTACAATCCTTACTTGATTGTCATTATGTACATCACTATGTAtacatttagaaattaaatgTTACCAAAAGCATGGAAGTAACGTTAAAGGTATACACATAAGAGGTCCCTTCCAGTTCCCATGATCGCAACAAAACCCTTGAGCTGTGGTGCAAGGGAAGTACAGTGAATCGTCATCATCGTAACCATCTCATCatgttcactctctctctcttttttgtttaaacGACTGGATGCTCCGACTCCCTCCACGTCATCAAAGGCCAGGGATTCAGCATTCATCTTCGACTTCTCTGATAGGTGGAATCAGGCTGGTAGTGGATTTGTACTGATTGACTTGATTGGCCATGTGAGTGCTCATCGGCTTGATTTGAATGTTCCTTGGGTAGGCATTTTCTGGTTCATCTGTAAACCATTTCTTTTCTTGTGTTTGTCTCGGGCCTCGCGGGCCTTGCTGCTGCGGTTTTGCCGGTTGGTGGCTGGGATGGAGTGAACAGAGGAGCTCTTCTTGCTGGACGAGTGCGAGGAATGAGAGGAGTGGCTGGTTCGAGACTGGCCCGCATTGTGGTCAAACTGCATCAGGCAGAAGATCAAGTCTGTGGGGACCAGCTCAAACTCGTAGGGAGGGTTGGTGATGACA

Function

symbol description
kcnma1 Enables actin binding activity; identical protein binding activity; and potassium channel activity. Involved in several processes, including cellular potassium ion homeostasis; negative regulation of cell volume; and smooth muscle contraction involved in micturition. Located in apical plasma membrane and caveola. Is integral component of membrane. Part of voltage-gated potassium channel complex. Implicated in Alzheimer's disease and idiopathic generalized epilepsy.

NR:

description
calcium-activated potassium channel subunit alpha-1 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296533 True 4665 lncRNA 0.39 2 22809819 22818104

Neighbor

gene id symbol gene type direction distance location
LOC103042035 zgc:110045,LOC108444131,LOC107582498,LOC107721227,LOC107678543,LOC107708438,LOC108262845,LOC107698144 coding downstream 414899 22379123 ~ 22394920 (-)
vwc2 vwc2,LOC107589538,LOC107678488,LOC107698155,LOC107721217 coding downstream 450206 22328143 ~ 22359613 (-)
spata48 NA coding downstream 513047 22284552 ~ 22296772 (-)
ikzf1 ikzf1,LOC107698154,LOC107721232,LOC107708437,LOC107589539 coding downstream 534927 22250732 ~ 22274892 (-)
ttl ttl,LOC107678537,LOC107698152 coding downstream 576587 22222540 ~ 22233232 (-)
lrmda cunh10orf11,c3h10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444,LOC105909757 coding upstream 28178 22846282 ~ 23286449 (-)
LOC103037680 vdac2,LOC108444242,LOC107747461,LOC107582506 coding upstream 620552 23438656 ~ 23446125 (-)
zfand4 zfand4 coding upstream 844594 23662698 ~ 23691895 (-)
washc2c NA coding upstream 875152 23693256 ~ 23708270 (-)
LOC111195939 fam21c,LOC107678570,LOC107589565 coding upstream 891181 23709285 ~ 23714358 (-)
G218448 anxa11,anxa11a,LOC108263209 non-coding downstream 357883 22441756 ~ 22451936 (-)
G218441 NA non-coding downstream 390446 22416898 ~ 22419373 (-)
G218435 NA non-coding downstream 402070 22405961 ~ 22407749 (-)
G218423 NA non-coding downstream 410273 22396092 ~ 22399546 (-)
G218388 NA non-coding downstream 605356 22202153 ~ 22204463 (-)
G218527 NA non-coding upstream 24897 22843001 ~ 22843214 (-)
G218602 NA non-coding upstream 641388 23459492 ~ 23467044 (-)
G218698 NA non-coding upstream 940327 23758431 ~ 23760825 (-)
G218703 NA non-coding upstream 965714 23783818 ~ 23784105 (-)
G218697 NA non-coding upstream 967263 23785367 ~ 23786980 (-)
G218329 eif5,LOC107589547 other downstream 753326 22051889 ~ 22056493 (-)
LOC103022835 NA other downstream 764707 22038423 ~ 22045112 (-)
G218240 NA other downstream 954678 21851372 ~ 21855141 (-)
LOC111195999 NA other downstream 1052411 21708787 ~ 21757408 (-)
LOC103031576 cisd1,LOC105902329,LOC108443718,LOC107549159,LOC107747252,LOC107665600 other downstream 1602993 21160374 ~ 21206826 (-)
G218545 NA other upstream 26729 22844833 ~ 22846205 (-)
march8 march8 other upstream 636071 23454175 ~ 23656986 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other upstream 1017675 23835779 ~ 23849800 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other upstream 1032859 23850963 ~ 23857507 (-)
G218781 NA other upstream 1237421 24055525 ~ 24056877 (-)

Expression


Co-expression Network