G218561


Basic Information

Item Value
gene id G218561
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23291508 ~ 23292077 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296577
GAAATGTCTATTTATTCTACAAACATGGTCACATGGTACAGAATTCAGGACAGttttaaacaacataaaacagcagcacttttccaaacattttaattttaacatatttttacatattgtatacacatttctatatatttatatacatacattaatatataattacagaAACATCTTAATTGTACTAGTCTTCAATCAATAATACAGTCTGTTCCTATTTTTTCctcttaaaattattattattattttattctggaTAAACAAAGTCTTTACCTTCCAGTCGTGCAGTGCAGTGAGTATGAGCAGGTTGGTTTTAGTTTCCATACGTGTCCGTTCCTACATCAGCCCCTTCCCGAGTGAATAAAGCAGCACAGTGGCCCTCATATGAAGTGCTTCTATAGCAAGGTGCTTCTTCCCCCGTGTGCCCTTTCCTCAGTCACCCGCGGCCTGTAATCAGCTACGAGAGCTGACATAAATCAACAGGAGGATTGACAGCCACTGACAAATAGCTGATTGATCGCGGTGGAGCAGAATTGACAGCTGACGGAGGGGTGGGGATGGGAATGGGAG

Function

NR:

description
CKLF-like MARVEL transmembrane domain-containing protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296577 True 570 lncRNA 0.39 1 23291508 23292077

Neighbor

gene id symbol gene type direction distance location
dlg5 dlg5,LOC107708441 coding upstream 738050 22466478 ~ 22553458 (+)
anxa11 anxa11,LOC108263209,LOC107708439,LOC107678500 coding upstream 839571 22429642 ~ 22451937 (+)
mocos mocos coding upstream 872166 22405805 ~ 22419342 (+)
fignl1 fignl1 coding upstream 1047060 22240693 ~ 22244448 (+)
klc1 klc1a,klc1,LOC107708436,LOC107698151 coding upstream 1087294 22169484 ~ 22204214 (+)
znf503 znf503,LOC103355656 coding downstream 33 23292110 ~ 23295682 (+)
LOC103038538 LOC108444215 coding downstream 117021 23409098 ~ 23414421 (+)
LOC103038211 NA coding downstream 126037 23418114 ~ 23421870 (+)
LOC111195938 NA coding downstream 132532 23424609 ~ 23433147 (+)
tet1 NA coding downstream 491728 23783805 ~ 23834228 (+)
G218477 NA non-coding upstream 487042 22803912 ~ 22804466 (+)
G218474 NA non-coding upstream 563008 22727646 ~ 22728500 (+)
G218455 NA non-coding upstream 757087 22533993 ~ 22534421 (+)
G218454 NA non-coding upstream 812522 22478229 ~ 22478986 (+)
G218451 NA non-coding upstream 834285 22456833 ~ 22457223 (+)
G218570 vdac2,vdac3,LOC107747461,LOC107690181,LOC106608573,LOC103386924 non-coding downstream 146157 23438234 ~ 23446098 (+)
G218576 NA non-coding downstream 217808 23509885 ~ 23606964 (+)
G218654 fam21c,LOC107678570,LOC107589565 non-coding downstream 417507 23709584 ~ 23714345 (+)
G218655 NA non-coding downstream 423332 23715409 ~ 23715662 (+)
G218656 NA non-coding downstream 424635 23716712 ~ 23719841 (+)
kcnma1 kcnma1,LOC108263740 other upstream 473394 22563798 ~ 22818114 (+)
G218351 NA other upstream 1072648 22217299 ~ 22218860 (+)
mark3 mark3 other upstream 1193249 22060963 ~ 22098259 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other upstream 2875865 20335947 ~ 20415643 (+)
G217874 nkx2-3 other upstream 3217165 20020414 ~ 20074343 (+)
G218651 NA other downstream 404500 23696577 ~ 23708243 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other downstream 689058 23981135 ~ 24028981 (+)
G218758 NA other downstream 767134 24059211 ~ 24063788 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other downstream 772418 24064495 ~ 24071626 (+)
LOC103046104 LOC108441759 other downstream 1151214 24443291 ~ 24466867 (+)

Expression


Co-expression Network