G218688


Basic Information

Item Value
gene id G218688
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23780213 ~ 23780504 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296733
GAAAATGCAGAGAATTAATAATGAAACGTTCATGTTcaagatcatttattttatttatagacaacataaaaatgtaaacaccCTTTTTTCATCGTTCGAcagcagcagaaagagaaaataaagcgAGTCCGCGTAGCTTACGCAGTCTACGCAGCGCGCTCGTGCCCGTGAACAGAAACTGTGAAGTAGCGCCCTCTGTGGTCACAAAACCCGACGGtcacagaaaacggtgtaacaccggTATAACGCTGCTGTAGTCCAGTGAATGAGAGGCgggcattttaaaataaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296733 True 292 lncRNA 0.43 1 23780213 23780504

Neighbor

gene id symbol gene type direction distance location
LOC111195938 NA coding upstream 347066 23424609 ~ 23433147 (+)
LOC103038211 NA coding upstream 358343 23418114 ~ 23421870 (+)
LOC103038538 LOC108444215 coding upstream 365792 23409098 ~ 23414421 (+)
znf503 znf503,LOC103355656 coding upstream 484531 23292110 ~ 23295682 (+)
dlg5 dlg5,LOC107708441 coding upstream 1226755 22466478 ~ 22553458 (+)
tet1 NA coding downstream 3301 23783805 ~ 23834228 (+)
LOC103032634 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC107747456,LOC107708453 coding downstream 55337 23835841 ~ 23841403 (+)
LOC103031995 LOC108444338,LOC104946244,LOC103387332 coding downstream 70411 23850915 ~ 23857518 (+)
ccar1 ccar1,LOC107690173,LOC107582549,LOC107708455,LOC107747452 coding downstream 78639 23859143 ~ 23879402 (+)
stox1 stox1 coding downstream 116078 23896582 ~ 23917252 (+)
G218681 NA non-coding upstream 16776 23763218 ~ 23763437 (+)
G218680 NA non-coding upstream 17453 23762247 ~ 23762760 (+)
G218675 NA non-coding upstream 30985 23748723 ~ 23749228 (+)
G218656 NA non-coding upstream 60372 23716712 ~ 23719841 (+)
G218655 NA non-coding upstream 64551 23715409 ~ 23715662 (+)
G218742 NA non-coding downstream 157566 23938070 ~ 23938274 (+)
G218743 NA non-coding downstream 165054 23945558 ~ 23945812 (+)
G218754 NA non-coding downstream 231371 24011875 ~ 24019458 (+)
G218795 sfxn3,LOC103040609,LOC108263463,LOC108441766,LOC107708462,LOC107678536,LOC105911632 non-coding downstream 302435 24082939 ~ 24091553 (+)
G218799 NA non-coding downstream 353672 24134176 ~ 24137086 (+)
G218651 NA other upstream 71970 23696577 ~ 23708243 (+)
kcnma1 kcnma1,LOC108263740 other upstream 962099 22563798 ~ 22818114 (+)
G218351 NA other upstream 1561353 22217299 ~ 22218860 (+)
mark3 mark3 other upstream 1681954 22060963 ~ 22098259 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other upstream 3364570 20335947 ~ 20415643 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other downstream 200631 23981135 ~ 24028981 (+)
G218758 NA other downstream 278707 24059211 ~ 24063788 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other downstream 283991 24064495 ~ 24071626 (+)
LOC103046104 LOC108441759 other downstream 662787 24443291 ~ 24466867 (+)
G219050 NA other downstream 1061798 24842302 ~ 24842533 (+)

Expression


Co-expression Network