G218706


Basic Information

Item Value
gene id G218706
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23822483 ~ 23824595 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296787
CAGTCACAGGAGGGGAGCTCCGGAGTTTTTTTGGAGGGTGTGTTGATTAGATTCTTGGTTGGAGTGTCCAAGTACTTCAACGGAGATTCCAAAAAGCTGTTAAGCATATGCTTGGTGGGAGTGTTTTCTTCAACGGATTCAGTGTTAGCATTTTCCATGTTTCCAGCTGACACAGACAAAACGGTGACAGCGCCAGCCGTGTCCACTTTGTAACGTCCATTCTGACCAAAGGAAGTCTGCCGCGGCTCACAGCTTAGGCTGTTTACTTTATGGCACCTCCCTGGACTCCCTGGCAATGGATCTGCACCAGGGACACTAGGCATGGCATACTGGGCTTGTGGATTAGCACCATGATTTAGCACACTGTATGTTTTCGATACCTGAGAAATCAAATGTTCTTCACATTCATACTTCTGGCCATGTGTAGCACCTAGATGACCATTTGTGAGACTGTGACAATGTCCGTTGGATCTGAATTGGTTAACATGGGAATGACTCAGAGCTGCGTGGTCTGTTTTGTAAGTAAAAGCTTTCTGATTTCCGGAACTCTTGAGAGTCTGCATGTCCAAGTCTTGTCTCTTGCTGCTAAAATGGAACAGCTGATGTTTCTCATGATGAGCCTGTGCTAGGTATTTTTTCAGGTCTATCTGAGTCTGTGGGAGAAACGGGCTCCACTTGGGTTGTGGTTTGGGCTTTTCCTGCAAGGCCACATGCTGGGCTTTTGTCTTGAAAGGGGGTTTGCTATTGGGTGTCCTTTTGGCTAGTGGTATCCTATGGTTGCCTCCCTCAACCTCAGAGGCTTTTTTCTTTGATATCCTGGGACTTGAGGGAGTTGTTCTTGGTTTCCGttgcttttttacattttgtccaaCGACATGATGGTTGTATTTTATGGTCTGTACTGGCATCCCTTTGGGGGGACTGTTCTCAGAAGACATGGGATTGGTTCTTGATTGAATTATGAATGCAAGTTGCACCAACTGAGCTGCAACTTCCTCCTCATCTCTCCTCCTTGAGGTCTGCGTCCTTTCAACAtgcttaaaagtcttaaaagtgcCATCTAacttttctgttttacaaaGTGCTTGACTTACTCGTCCATTCTCTGGACTATGCAAGAGCTTATCATATGAGCTAGCTATTAAAAGATCCTGTAAGGAGAGTTTGGGGTGGGTGGGGTTTTCCTGTCTGTTCAGAGGGCTGCAAATTACAGAAGTCTGATGTGAATTGATTACAGAGACTTTATTGGAGATGACCTCAGATATGGGTTTAGCCTCTTGGACCGGACTTTGCCTGCTTGATGAAACATTTGCTAATTTGTTACAAGATTCTTGTGGAGGGTCCTGAACTTTAGAATCTGCCTTGACAGGAGCTGATTTTGGGGTAGCTGCCAGCTGGGTCAAGGCCTCAATAGCTATTGCCTGATCAATGCTTATGTTCCTATGCTCAACTAAAGACTGGACACTATTATTAGTCAGCGGAACTGGGTCTTTCGGATGGGAGTTATCAGCACCTGCTGGACTGTTAGAAGTCCTTTCCTGATGTGAATGACTCTGATATggttcttcttctctttcagtTTTAATATTACAGGCATTTGAGGTCTGAGGACCAACTGTCTTCTCCTCCAAACCCTTCAGATCAGAGATGGTTGAACATACAACATTTGCTAAAGTAGACAAAGCATCCTGGTAGAAGTCGCTGCTGCTTAGGTAGGATGTGCTGTGTTGATCTGACACTGTGCTAGGCTCTTCTAGCTTGATCTTCTTCAGAGGAACTGTCTGTGCAGGAATTGCCTCAGGTGTCTGGCTTTTGGTGGGCATGTTCACAGTCCTTTGAGACTTAGACTGCAGGTCAGTGGGATCTCTGTGATCCTCAGTGTTTGGTTCCATATGATTAGCACCATTGTGGGAGCTTAAAGAGCTCTGGTGAGTAAGAAGTGCATGGTGGCTGACAGCAGGCTGAAGGGCTCTTTCGGCTGGTGCTGGTTCAGTGTCGTGCCCGAGAGGCGTGGGAGAGTCAGGTGGAGCGGAGTGTGCTTGAGATACGTCACGCGCCTCTTCCTCTGGCACCACACAGGTCTCTTCCATCTGCTCTGAATTAGTGCCATTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296787 True 2113 lncRNA 0.46 1 23822483 23824595

Neighbor

gene id symbol gene type direction distance location
slc25a16 slc25a16,LOC107678603,LOC107708451,LOC107747470 coding downstream 59679 23750134 ~ 23762804 (-)
alox5 alox5,alox5a,LOC107747471,LOC107708393,LOC107690200,LOC107582511,LOC107678516 coding downstream 79837 23723299 ~ 23742646 (-)
LOC111195939 fam21c,LOC107678570,LOC107589565 coding downstream 108125 23709285 ~ 23714358 (-)
washc2c NA coding downstream 114213 23693256 ~ 23708270 (-)
zfand4 zfand4 coding downstream 130588 23662698 ~ 23691895 (-)
LOC103041217 mat1a,LOC107582520,LOC107678534,LOC107733750,LOC107708460,LOC108263526,LOC105911600,LOC107570529 coding upstream 206279 24030874 ~ 24040368 (-)
LOC103040609 LOC103040609,LOC108441766,LOC108263463,LOC107678536,LOC107708462,LOC107570532,LOC106577244 coding upstream 255272 24079867 ~ 24091509 (-)
lzts2 lzts2,lzts2a,LOC107733684,LOC107582523,LOC107708464,LOC107690159,LOC107570533 coding upstream 313227 24137822 ~ 24255139 (-)
LOC103038918 LOC108441763,LOC108263187 coding upstream 503488 24328083 ~ 24401465 (-)
LOC103039233 NA coding upstream 581312 24405907 ~ 24428299 (-)
G218709 NA non-coding downstream 5814 23815871 ~ 23816669 (-)
G218697 NA non-coding downstream 35503 23785367 ~ 23786980 (-)
G218703 NA non-coding downstream 38378 23783818 ~ 23784105 (-)
G218698 NA non-coding downstream 61658 23758431 ~ 23760825 (-)
G218602 NA non-coding downstream 355439 23459492 ~ 23467044 (-)
G218711 NA non-coding upstream 3082 23827677 ~ 23827885 (-)
G218712 NA non-coding upstream 3897 23828492 ~ 23829019 (-)
G218713 NA non-coding upstream 4477 23829072 ~ 23829444 (-)
G218714 NA non-coding upstream 6371 23830966 ~ 23834202 (-)
G218731 ccar1,LOC107678563 non-coding upstream 48246 23872841 ~ 23895814 (-)
march8 march8 other downstream 165497 23454175 ~ 23656986 (-)
G218545 NA other downstream 976278 22844833 ~ 22846205 (-)
G218329 eif5,LOC107589547 other downstream 1765990 22051889 ~ 22056493 (-)
LOC103022835 NA other downstream 1777371 22038423 ~ 22045112 (-)
G218240 NA other downstream 1967342 21851372 ~ 21855141 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other upstream 11184 23835779 ~ 23849800 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other upstream 26368 23850963 ~ 23857507 (-)
G218781 NA other upstream 230930 24055525 ~ 24056877 (-)
LOC103045183 emx1,LOC103045183,LOC108441775,LOC108263581,LOC107567848,LOC107678523,LOC107733702,LOC107690190,LOC102233543,LOC103458176,LOC103150078,LOC107097582 other upstream 858642 24683237 ~ 24700649 (-)
LOC103046115 lrit3 other upstream 1393554 25218149 ~ 25226250 (-)

Expression


Co-expression Network