LOC103032322 (eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348)


Basic Information

Item Value
gene id LOC103032322
gene name eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23835779 ~ 23849800 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296797
ttttttctaccaCCTGTTTCACACAGTGACATTTTGCATATGGACAACCAGCTTTGCACCGGTGACACACGGCAAGGAAATAACTGAAATTGTTCAGTTTTAGCCACTTGTGTGTCTGGAAACTGGATAAAGGGTGTGGTATACAGACGTCAGTGGCTAATTTCACAACAGCAATGATGACAttgttaacttaaaaaaaaaacaaaaaaaaaacaaagagtgaATTACATGATCAAAAACTATGATTATATCAATGCCAACGGCAACGGATTTATTTCAAGAGTAATATGGTTTCATTAGTACTGTGTGCACCGAGAATTAAGAAACAGCACAGATCATCCTGTTAATGCAAAGCACTTAACCTTTACTCGAAAGAAGGTAATATACATCCGGAAATTACAGATAGGTACATTTTGAGCAAAATAAATTCACAATGAATATCCTCTTCATTTGAATTCACTCACAGAAGTGGAGCAAACTAGAAAACGTTTACAATGTTGTTAGGAGGGGGAGAAATGTGAAAAGCACACCTAAAAAGCTGTTTAGGCATTTACTttataatacactgtaaaaaatgatttagtcCACATTGCCAACAACttcaaacaaaaaaggaaaaaaaaaagaaacagaaacttGATTTTCAGTCATCCTCTCACTAAAGTTCAACTGCAATGCAGATATCATAAATAGATGTGGGGCTAACACAAAAAGTTGAATATAGGTCTACAAGCAAGATTCTGCAAGTTCAGCATAGCTGAACCAATAATTGGCTACTCTTCCAAACTCGGAGAACAACCACAGCTAATCTGTTACAAACCTTTAAGATAGTCAATCTGCAGACGCCTCTGCAATCACTTCTCATGCCAAACACCTCTAACCAAAGcatgttaaaatatttgtgGCCCTTAAAATGTACGTAGATGAAGCgatcaatatttattttcttgtacGTGTGGAACACTTTTATAAGAAACATGAGAAAAGAAAGGTTAAAGGAAAGAAAGCTGACTCTTCAATCTAAGCTTTAGAACCTCTTTAGCTAGGGAAgatatagtttattagtttcACACTCTTGAGCTCTAAAATTTTGTCATCTAGCTTGATTCACACAGCTTTAGTTGATGCAGTCCCCCTCGCAGGTCTAAAGCATTAGACGTTCCTTGACCCACACCATGTGTGCTGATCGTTTAGGATGGGGATTactatacatttacatatttaacattttttctttatttttttcttaaaaaggaAGGACACTACAGTAGTTGACAACTCAAAAGTATTATTGTGATGCAAATTGGTAATTTTATAAACCTACAAGTTGAAAGTCTTCTTCAAACTGAGTACATGTTCTTTGTTGTGGAGCCACTTTTGCTAGAGGTGTCATCATGGGACTGGTATCCAATAAGCGTTTTGATTGGGAGATTCAAGCGCTCTTTGTATTGAAGcCCTATCGTCATGATAGCGTCTCTATTTTGGCAGTTTCCTGTCCAGATGGCTATTTTATCCCCCTTCGGTCGAACGTTCACCACAGCTCCACATACGTCTTCACTGGCTTCATCAAAAGACTCTCCAATTAAACACAACAGTGTCTCCATCCAGTATCGGTCAAGGTCATTGTGTCGCTGCTGTTTGCTGAGAGTCATTAACCATCTCCCTCCAAGTTTATTCCTGTCATCCTCCCACATGGGCTTGATGCCATcCTTAAATAAGCAGTAATCACAACCAAATCCAAGCTTACTGGGTTGTTGTATATGGTTGTATAACGCCCAGAAATCTTCCACTGTGTCAAATTTGGAGATCAGTCGCAGGTTTTCTGTCCAGCTTTTGCTCTTGTCGTTTTTGAAATACCAGAGAGCCCATCTGTTTTGCAAAGGGTGCTTGATGTACTGTTCTGCAACAGCTGGTGTAGGACTATCATTTGAAGCTTCTTCACTTTCAGTTCCTCGCGGCTCCGATGTCGCCATCTTGCCTGTATGAGATTCTGCTGCCCGTTCGGCGCCGCTGCGTCACGCGAAACCGCTCGGACTGTACGGCGGCCTGCAGAGGACACGCGCTCAAGTCCTGCACCCACttcacagagagacagagcagcAAGCCGCCAGACACGTCACCGCCGTCACCGTCCATTTACACACTTTTGTCTGTCTGACAGAGAGACTCTTatctgaa
>XM_007240269.3
GAATGTGAATAGGCGTTAGGCCTAAGCAAACAGTGAGATAAGGCCAGTGCTAGACCCAGCCCAAATTTCCTAAAGGCTGTTTTGTGACAGGACGAAGTAATGTAAGGAGTGGTTAGAAAAGTTCAGTCAGCCTTAAAGCTGTCTTCATTCTCAAAAAGAAGAATGCAGTCTGGGTGGTAGAAGACAGGCATGGCAAACCTGTAAAGTCTTCTCCTCTTCAGTGAAGTTACTCTGTGCTTGTCTAGGTGCTGTGAAGAAGAAGGACACAGTATGAAGTTGGCTCAGAAACTGACTGATAACTGATAACACTGAAGAAAGCTTTAGAAGAACACATCAGCATCTCTCCGGATTTACTTTGAGTACCTCTCTGTTCAGAAGACATGGGCTTGTGGATTATTTTACCCATTACACTCTCTGCTGTCTCGTTCATCGGGTGCTGGGTGGTATATGGCCTTGCAGTCAGCTTTAACCATGTCTGCCCACTCAGCAACTGggAATACAAAAACTCGTGCCTGACAAATGAAACTGAGTTTTGTTGCACAGACAATAATGTACCCACTATAAGCACAAGTGGAACATATTTTCCAGAAAATTCATTATTTAGTGCTACAATTAATGCCGGTTCATTTTTGTttctGATTTTCTGCATTTTCCACCATGCACATATTGTGGATAGGAGCATCGCAAACTCCCTCCTCAGTAAATTTGCTATGGTTTTTGGATGCATTGCAGCCATTGGTGCTTTTGTGGCTGGGAACTGCAATCCAGCCGAGTTGGTGTTGCTGCATTACCTCGGAGCTGCTCTGAGCTTTGTGTGCATCTGCTTCTACACTGTCCTGCTGACCTCTCTGACCAGCAGGTGTGGCCTCACTGGAATGGAGAGCTTCCTCTATCCATTACGCATCGTCTCCACCAGCATCCAGGTCGTCGTGACCATCCTCTACTGCATCTTCTTCGTCCAGACCTCGTACTACTTCAAGCACCTCTCTGCTGTCTTCGAGTGGACACTCAGTGCGAATCTGGAGCTCTTTGAACTCAGTTATGCTGTGGAATTTTATTGTTTCTCCTCTGCGATGCTGTCGGTGCTTCTAGAACGGAGGGGCGAAGAAAAACCTTTAATTTTGTCCTGATGACTGGCGTCATGTCTACttcagattatttatttttttcttttccataaTGGACATATGAAGTGTCAtaatttatctatatatatataaatatatatatgcacaaagGCATCTTACATTCTTCTTAGGTTATGGGCAAAAAAACAGGCTTTATTATTACTGACATgacaaatcacatttttaaaaactggaAATGTTAGAGATGATCAGAGCAGGTTGTTAGTAAACCAGCTAGAGACAAAGGCATGCAGGCATGTTTTCTGTAATGATCTAGATTTCACAAATGCAATTTTGACCTCATTTCTTTAAATACCAAAGCTGGtcatttgttttacagaattgcTGGGTAATGTTCAGTGAATGTATcatataatctaatctaatcgcAAAATACCTCAAATACTTGGAAATCAGATGGCATTATATTTGGAATATATGTATGGTAAGAATGACAAAGGTAAGAATGTAGCATGAATGTAGGCTAGTTCAAAAATGAATCACCTCATATGAAGTTAATCTGTAAAATCATATTCTTTGGCATATCAGTTCCATTTCTGTGGTGTAACACCCATTCGAATCCTCTCTACTGTAAATATGTTCTGCTGGCTTCATATTTTAGTACAATTTAGCAGTGATAATAGTTTCCAAATTCTTCCAGCAGAGAACAAACCAAACCCACGCTCACATAAGCTTTGAGAATGAATCACTGCAtaaccgcttcagtttctgagcaaaacaaagaacaattattttaaactctagtaaTGTTTTTCAGTTATTGCACTCTAGTAGCTTTTTGGTGTTTCAATGTATGGTTATGCACTCCAACATTACCACTTAGTTTACTTTAGAGTTTTCAGACATTAGATAAAGTCTGATTATTGCAGGGTCAATTCAAGTAAAACACATtcatttgtattaaattaataaataaataaagattaaggTAAATGTCATTGTAGCTCTCTGGGCTGTGATTTTATGCTGTTGCacaatgtaattaattaatccTCAAGGTGGATTGCTTCATGAAATGATTACCAGCTaaatcttgtgttttttttttggctctcaTGGACGCATATATTTTCATACTGCCCAGACAAGCAGCTTTAAAAAGCTGCTATGGCAAATTATCACATTACTGATTGGAACTTTGAACACAAGAGAAACGCCTCAGGGCACGTTGAGTCGTTACAGCAGAGTAAATTCTTGACGTGTTCATGGTGGTAGGTGTGGTGCACTTCAAGCTTTGGACTAAAACTGACATGCAAACTGTCAGTATAACAAATCCATATGTCATTATTTGTGTTAAACCACTTGTGTCCAGATTTCCTTTACTCAGGTCAATCCATTCTGTGTCTGTTTGCTGTAAAGCTAAATATGATTGTAACATAGTCTCCATTTAAACAAACATGAGCTAAAATTGAACTTGCTGTCTTTTCTTCACAACATGAAAAGACTACATGCATTTACTAACCCTTGTTTGTAGCCTCTGGACATTAAATTTCTCTACATTCAGCTAGTGGTTGAATTTATCGCCTTCTATTGTTGTCTGTTCATAATACAAAACAGCAACCCACAGACTGTAGgataagttttattatttttttctaccaCCTGTTTCACACAGTGACATTTTGCATATGGACAACCAGCTTTGCACCGGTGACACACGGCAAGGAAATAACTGAAATTGTTCAGTTTTAGCCACTTGTGTGTCTGGAAACTGGATAAAGGGTGTGGTATACAGACGTCAGTGGCTAATTTCACAACAGCAATGATGACAttgttaacttaaaaaaaaaacaaaaa

Function

symbol description
eif4e1c Predicted to enable RNA 7-methylguanosine cap binding activity and translation initiation factor activity. Predicted to act upstream of or within translational initiation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 4F complex. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human EIF4E (eukaryotic translation initiation factor 4E) and EIF4E1B (eukaryotic translation initiation factor 4E family member 1B).

NR:

description
transmembrane protein 150A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296797 False 2178 lncRNA 0.40 7 23835779 23841648
XM_007240269.3 True 2945 mRNA 0.39 7 23841441 23849800

Neighbor

gene id symbol gene type direction distance location
slc25a16 slc25a16,LOC107678603,LOC107708451,LOC107747470 coding downstream 72975 23750134 ~ 23762804 (-)
alox5 alox5,alox5a,LOC107747471,LOC107708393,LOC107690200,LOC107582511,LOC107678516 coding downstream 93133 23723299 ~ 23742646 (-)
LOC111195939 fam21c,LOC107678570,LOC107589565 coding downstream 121421 23709285 ~ 23714358 (-)
washc2c NA coding downstream 127509 23693256 ~ 23708270 (-)
zfand4 zfand4 coding downstream 143884 23662698 ~ 23691895 (-)
LOC103041217 mat1a,LOC107582520,LOC107678534,LOC107733750,LOC107708460,LOC108263526,LOC105911600,LOC107570529 coding upstream 181074 24030874 ~ 24040368 (-)
LOC103040609 LOC103040609,LOC108441766,LOC108263463,LOC107678536,LOC107708462,LOC107570532,LOC106577244 coding upstream 230067 24079867 ~ 24091509 (-)
lzts2 lzts2,lzts2a,LOC107733684,LOC107582523,LOC107708464,LOC107690159,LOC107570533 coding upstream 288022 24137822 ~ 24255139 (-)
LOC103038918 LOC108441763,LOC108263187 coding upstream 478283 24328083 ~ 24401465 (-)
LOC103039233 NA coding upstream 556107 24405907 ~ 24428299 (-)
G218714 NA non-coding downstream 1577 23830966 ~ 23834202 (-)
G218713 NA non-coding downstream 6335 23829072 ~ 23829444 (-)
G218712 NA non-coding downstream 6760 23828492 ~ 23829019 (-)
G218711 NA non-coding downstream 7894 23827677 ~ 23827885 (-)
G218706 NA non-coding downstream 11184 23822483 ~ 23824595 (-)
G218731 ccar1,LOC107678563 non-coding upstream 23041 23872841 ~ 23895814 (-)
G218732 NA non-coding upstream 28457 23878257 ~ 23879403 (-)
G218765 NA non-coding upstream 96414 23946214 ~ 23946546 (-)
G218777 NA non-coding upstream 131381 23981181 ~ 23984516 (-)
G218779 zgc:154058,LOC103041715,LOC107582519,LOC107570530,LOC107708463,LOC107733751,LOC107678495,LOC108441772 non-coding upstream 173037 24022837 ~ 24025889 (-)
march8 march8 other downstream 178793 23454175 ~ 23656986 (-)
G218545 NA other downstream 989574 22844833 ~ 22846205 (-)
G218329 eif5,LOC107589547 other downstream 1779286 22051889 ~ 22056493 (-)
LOC103022835 NA other downstream 1790667 22038423 ~ 22045112 (-)
G218240 NA other downstream 1980638 21851372 ~ 21855141 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other upstream 1163 23850963 ~ 23857507 (-)
G218781 NA other upstream 205725 24055525 ~ 24056877 (-)
LOC103045183 emx1,LOC103045183,LOC108441775,LOC108263581,LOC107567848,LOC107678523,LOC107733702,LOC107690190,LOC102233543,LOC103458176,LOC103150078,LOC107097582 other upstream 833437 24683237 ~ 24700649 (-)
LOC103046115 lrit3 other upstream 1368349 25218149 ~ 25226250 (-)
G219510 NA other upstream 2622828 26472628 ~ 26474247 (-)

Expression


Co-expression Network