G218731 (ccar1,LOC107678563)


Basic Information

Item Value
gene id G218731
gene name ccar1,LOC107678563
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23872841 ~ 23895814 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296824
taaaaaataaataaaaaaaaaaaaacaaaataaaaatccattTCTAGGATACATAGAAGCTCTCTAGCTTTTTATAAACGATCCAAACCCCACCCATCAGCCAATCAATGCCAGTTCTGTGGAATACAAAAAGGTAATCAATGACAGTGGGTccaagaaatgtaaaatgtgagaGATGCACTCAGATGGTCTCCAAACTCAATGTGTGTACGGGCCTCCCTTTATCTACATTTGCAATTTGATTTTACTCCTTTTCTCGCCTTTTTAACATCTAGTCATAGCAGACTGTCCTTGGATCAACCAACCACCCTGGAAAAACCAAGTTCACAAGTCTACGTACAGCCCAATCCGAGAATAgtgtaaaatcaataaaaagggACAGACAAGAGACAGAACTTTAGGAGTTTTTTGGAGTTCAGCAGTTAttgaattaaaaagtaaaatgaatcataaaagaaaacattctaaaaacacacattttacacaactGGCTATACAGATTCCAGCATCTCTTTAAATtaccacattttttaataacacAAATTCCACAAGCAAATTCTTGAAATTGTAGTGTGACACAAATTAAATGGATTAATTCCCCACCAGATTGGCGATTAGGTTTCATTAAATGGAGCTGGAATCTGTTTTACCAGTTGAAGCAGTGTCACTGAAATTCAAGCTAATCTGTTCCGTTGTGTGTGACTGCGGTCTGGGTGGGGTGGTGGTGCGAGGGCGGTGCTGGGAGAGCAGGAGAGGAAAGCAGGAGGGGACAGGGAGGAGGAAAAGGGATGAGACACAGGGGACAATAAAAGGGGGGTCTTGTATGATGCCTGTGATacttgtttgtatttgtgtgtttttgagtgttttGTCTGTCTATTCCTGTGCCTGTGAGAAGCGGAAATGAGAAGAGAAGGATTAGCGTTCAGTGCCTGTTCTCCATCAGCCTCCTTCCGTTCAGCCAAGAGTTTTTCTGCCAGCTGCTCCTTGAGTCCGCGGGACAGCCCTTCCCACTCTGAGCGGGTAGGAAGACAATGCCAAACATCCGGGAGAAATAAAACCACTGTCTCCACATGTGCGGGAACTGTGCGCCCTTTGTGAGTCTCCTCAGGGCGATGATAGCGAATCTCTGCAAAACGATACCTGTTGCAAAGGAAGAAGTGCATTGGAAAGAAACATTCTGTCAGACATCACACAAGGCCTAAACCCcaatacacactgatacacacagcTCCAACCCCCTGCCTCCCCCTTGTGGTAAGATGACCCCAGAATAAGACATAATGAAAATACAGTCTGCAGATCTCCAAAGTAGGTTCTCACGATGAACGGCAGCCATGTATCAGGGAAATCGACAGACAGAAAACATACAACGACAACTGGGACAATTCCCTGCCCTTCCCTCCTGTCAGGGCCCTCCCCTCTAGCATCTGTGATTCTGAACTGGATGCTTGTGTAGGATAGCTTATGTACCCCCGTGGTGTGAGAAAGACAGATTCAAAAGACACGGTGAAAGCAAGTTAAATATGTAAGATATTTAACACAGGTCAAAGGTCATATAAAACAGAAAGTAATGGTGGTGACTCCTCCTCCGGCTCTGCTTTTCGAGCGACAGAATAAATGCATTCACCACATAGATAAAGAGGCAGGACTACACACATTAGCAAAAAGGACATTGCAAAATAAAGACAACAGAGCaaagaaatacataaaattacaagaattacagttaaattaaacaaacataaaaaagcctCCGACATGTCAGGATACTGAGCTTTTGTCAAAACCATGCAGTGGGTCACAGACTGTTGGATGCTTTCGGCTTAGACTTTTTAGTAATGCTTAGGTCTAGTACTGACAAAAGCAAACATTGACAAAGATGCATCAGAAGTGTGTTAGAATGGAGAGCTGTACTTACCACTGGGTACATAAACTCAGATCAATGCCTGTCAGAGCCTTACAACAACGTATTGCTGTCTTTATAAGGACTGAGGCATCGTTCTCTGGGTCAGCTCCATCCAGGGAGGGAGACCAGTGGCCACCGATGGCCATGGCCTCATCTTTGCCTCTCATTCCGAC

Function

symbol description
ccar1 Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human CCAR1 (cell division cycle and apoptosis regulator 1).

NR:

description
PREDICTED: cell division cycle and apoptosis regulator protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296824 True 2082 lncRNA 0.43 2 23872841 23895814

Neighbor

gene id symbol gene type direction distance location
slc25a16 slc25a16,LOC107678603,LOC107708451,LOC107747470 coding downstream 110037 23750134 ~ 23762804 (-)
alox5 alox5,alox5a,LOC107747471,LOC107708393,LOC107690200,LOC107582511,LOC107678516 coding downstream 130195 23723299 ~ 23742646 (-)
LOC111195939 fam21c,LOC107678570,LOC107589565 coding downstream 158483 23709285 ~ 23714358 (-)
washc2c NA coding downstream 164571 23693256 ~ 23708270 (-)
zfand4 zfand4 coding downstream 180946 23662698 ~ 23691895 (-)
LOC103041217 mat1a,LOC107582520,LOC107678534,LOC107733750,LOC107708460,LOC108263526,LOC105911600,LOC107570529 coding upstream 135060 24030874 ~ 24040368 (-)
LOC103040609 LOC103040609,LOC108441766,LOC108263463,LOC107678536,LOC107708462,LOC107570532,LOC106577244 coding upstream 184053 24079867 ~ 24091509 (-)
lzts2 lzts2,lzts2a,LOC107733684,LOC107582523,LOC107708464,LOC107690159,LOC107570533 coding upstream 242008 24137822 ~ 24255139 (-)
LOC103038918 LOC108441763,LOC108263187 coding upstream 432269 24328083 ~ 24401465 (-)
LOC103039233 NA coding upstream 510093 24405907 ~ 24428299 (-)
G218714 NA non-coding downstream 38639 23830966 ~ 23834202 (-)
G218713 NA non-coding downstream 43397 23829072 ~ 23829444 (-)
G218712 NA non-coding downstream 43822 23828492 ~ 23829019 (-)
G218711 NA non-coding downstream 44956 23827677 ~ 23827885 (-)
G218706 NA non-coding downstream 48246 23822483 ~ 23824595 (-)
G218765 NA non-coding upstream 50400 23946214 ~ 23946546 (-)
G218777 NA non-coding upstream 85367 23981181 ~ 23984516 (-)
G218779 zgc:154058,LOC103041715,LOC107582519,LOC107570530,LOC107708463,LOC107733751,LOC107678495,LOC108441772 non-coding upstream 127023 24022837 ~ 24025889 (-)
LOC111195998 NA non-coding upstream 158453 24054267 ~ 24055122 (-)
G218793 NA non-coding upstream 175101 24070915 ~ 24073134 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other downstream 15334 23850963 ~ 23857507 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other downstream 23041 23835779 ~ 23849800 (-)
march8 march8 other downstream 215855 23454175 ~ 23656986 (-)
G218545 NA other downstream 1026636 22844833 ~ 22846205 (-)
G218329 eif5,LOC107589547 other downstream 1816348 22051889 ~ 22056493 (-)
G218781 NA other upstream 159711 24055525 ~ 24056877 (-)
LOC103045183 emx1,LOC103045183,LOC108441775,LOC108263581,LOC107567848,LOC107678523,LOC107733702,LOC107690190,LOC102233543,LOC103458176,LOC103150078,LOC107097582 other upstream 787423 24683237 ~ 24700649 (-)
LOC103046115 lrit3 other upstream 1322335 25218149 ~ 25226250 (-)
G219510 NA other upstream 2576814 26472628 ~ 26474247 (-)
zbtb18 zbtb18,LOC107666464,LOC107587843 other upstream 2842990 26738804 ~ 26757592 (-)

Expression


Co-expression Network