G218743


Basic Information

Item Value
gene id G218743
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23945558 ~ 23945812 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296838
tgggtttcccgaaagcttcgtaacgctaagaacttcgttaactcgtacttaagattgatcgttaattaaagagtgtttcccaaaccggtgcgtaactaaagtactacgtaaactcgctcgcagattaacgagtgctctgacccagtcgttattcttaaAGAGCTTCTTTAGAGCAtctcgacttgcagttcagcaccttaaacaccagggaccgccaattttgaagaagaaaaaatattatttccgtGGTTGaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296838 True 255 lncRNA 0.42 1 23945558 23945812

Neighbor

gene id symbol gene type direction distance location
LOC111195940 LOC108263518,LOC108444380,LOC108442180 coding upstream 11946 23932621 ~ 23933612 (+)
LOC103039990 LOC105007542 coding upstream 12987 23929762 ~ 23932571 (+)
LOC103030417 si:ch211-198a12.6,LOC103030417,LOC108444387,LOC108263519,LOC107747450,LOC107589522,LOC107690167,LOC107678580 coding upstream 19445 23920183 ~ 23926113 (+)
stox1 stox1 coding upstream 28306 23896582 ~ 23917252 (+)
ccar1 ccar1,LOC107690173,LOC107582549,LOC107708455,LOC107747452 coding upstream 66156 23859143 ~ 23879402 (+)
LOC111196037 LOC105007542 coding downstream 5044 23950856 ~ 23953805 (+)
LOC111195965 LOC105007542 coding downstream 13262 23959074 ~ 23962101 (+)
LOC111196020 LOC105007542 coding downstream 19830 23965642 ~ 23969331 (+)
LOC103042015 LOC108441770 coding downstream 24878 23970690 ~ 23977592 (+)
pdzd7 pdzd7,LOC107690160,LOC107678494 coding downstream 146365 24092177 ~ 24130745 (+)
G218742 NA non-coding upstream 7284 23938070 ~ 23938274 (+)
G218688 NA non-coding upstream 165054 23780213 ~ 23780504 (+)
G218681 NA non-coding upstream 182121 23763218 ~ 23763437 (+)
G218680 NA non-coding upstream 182798 23762247 ~ 23762760 (+)
G218675 NA non-coding upstream 196330 23748723 ~ 23749228 (+)
G218754 NA non-coding downstream 66063 24011875 ~ 24019458 (+)
G218795 sfxn3,LOC103040609,LOC108263463,LOC108441766,LOC107708462,LOC107678536,LOC105911632 non-coding downstream 137127 24082939 ~ 24091553 (+)
G218799 NA non-coding downstream 188364 24134176 ~ 24137086 (+)
G218836 NA non-coding downstream 335893 24281705 ~ 24282056 (+)
G218841 NA non-coding downstream 371830 24317642 ~ 24318194 (+)
G218651 NA other upstream 237315 23696577 ~ 23708243 (+)
kcnma1 kcnma1,LOC108263740 other upstream 1127444 22563798 ~ 22818114 (+)
G218351 NA other upstream 1726698 22217299 ~ 22218860 (+)
mark3 mark3 other upstream 1847299 22060963 ~ 22098259 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other upstream 3529915 20335947 ~ 20415643 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other downstream 35323 23981135 ~ 24028981 (+)
G218758 NA other downstream 113399 24059211 ~ 24063788 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other downstream 118683 24064495 ~ 24071626 (+)
LOC103046104 LOC108441759 other downstream 497479 24443291 ~ 24466867 (+)
G219050 NA other downstream 896490 24842302 ~ 24842533 (+)

Expression


Co-expression Network