G218799


Basic Information

Item Value
gene id G218799
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24134176 ~ 24137086 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296916
aaaaaagacagacagaaagaaagacatggAGAAAGACGGATTAAAACAAATGTTACTTTGCTTTGGTCTATTCACAGTGGCTACACCTTTGTCTGCATATAGACTAGAATATGTGGCTGTATACAATGTTAGGAATATTTACATGTGTTTAGTCGTGGTCATGTGAGCTGAGTACTGGAAGGGAGAGTATAAAACATTGAGAATGAAGGAGGACTTCATGTCGGTATGACGAGGAGATTAACAGTCTGAATGCTCTGATCGGAATGAGAAAAGCACCTCGATTTCTCCTCATCTGTTTTCAGAGCTTCTGTGTGTGAACTAAAACACAGGTCTCAGGCAGTGTGGATGCAGGGCTACATTTAGACTGTGGTGAACACAAGAATTCACTGAATGGAAGGTTTCATGGTAAGAGGATGACAACCAAAactgaagcaaaaaaaatgacCAGACCTGCAATTCAGAGTAAACTAGCAAAAACAGGAACATTCTGATTAATACTGCTGGTCTTTTAGCTTTTAAGAACAGTTCAGAACAGAGACCATACTGAGGTCATAACCATGATGAAAGTGAAGCAGCTATGCTAGTGGTAGAGTTGAGTTGAGTGGAGGGTCAGTTGCTATGAGCTGTAAGATTCAGCACAATGACTGTTTCACTGCTAATTTGATTGGCaagaaataatttacattttaatatcaatgaaatattaataacaattaaCTTGAAAACTGAGTTTCCTGAAGCAACCCCATAATGGGCTAGGCTATGCTGTTGCAGATGTTTGGCTGTTTGGCTAGGCTGTCGTAGATAATTGCAAAGGCAAACCAGGTGGTTACTTGTGGTTACATGTTGCCAATGATATATAATGTGGTATACTAGTGTACTGTATATCACTAATGAACCATTCATTTCTATTAGCAGAAAATCCACTGCTAAGCGGAAACTGTTAATCTGACAAAATAAAGCTGTATACAAGCTTTCTGAGTACAATCAGAATTAATTGGAGGCGTATCCATATCACAAAAACTGCTAAATACGGATTTCCCCATGTTTGTTATTATCAGAGACATTGACTCCGAACTGccaatgtataaaaatgtagtGATAGTTCTGAACATCTGTTATaggttttaattaatgtttttaaatatagcaAACATTGTAGCTAAACTATTTCAAGGGGATTAATTTGGGTGTGTTTCCAATATGATCAAAATCACAATAGTAAAGTGAAATTTGTAAACTAcacataatgtttatatgaaaaCTGTGAGCAGTCACTGAAATGTACCTTACAAATGGTGATGGCAAACGATCCCTCCACTGGATTACTTGTTAAAGGATATGAGACACATATATCTGTTAAACCCACAACATTTCCTGTGTTACCACAAAATAGCTTGAGGTGCCATTtctatatagatgtatatatatatataaaaatatacatgatatatattttttaatatcccattcatatttattttaaagaatctgttctgtaaaaacaacaaagttatatttatatatagtgtatagatatatagatcTCCCTTCTTTTGTGACCAAATAATGTTTATGATTAGTATTTCACAACTGCAGATGATATTTACGCATACGTTATCTATGCTACTAGTGAGAGCAGTAGCTCTGCCCAGCGTTGCGTGACCTGTGTGATGTCAAACCTAGACATCCCGTCTCCGCGGAGATGACTATAtcgtatttatatatatgaccTTCAGACAGAATGCTACTGTATTCATGCACACATGCGATTCACTTGACATGACTTGAGTGTGTGCTGCAACGTTTCGCACTATTCTGCATGACATTACGGTCTGAGGAAAATCCAAAACAGGCATAAAATATcatttggctgaatattttaaagattctaCTTAGAAAAATAGTACTTCTAGATAAAGTGATTAGTATCTGATAGTGGAGGAACCTCTGTGCTGGGCCTCGGCAAGACAAAGGTAATATTAGGACACCACAACAGTTCAGAcgcttgttttgttttctccaCTTGTGAGTGAAGAGAAAGCACTCGAGTGTCCTGACTTGACTCGCAGTCTAAGTATCTGTGGGTTCTCCCTGGCTTGACCACGCCACTCTAAGAGTTCCATGACATCAATATTAATGCTGGTACACAGAAATCCATTAGTGCAGGTGCTCGTCTCCCATTAGTGCCGTAGCTGTGATATGAGTCCATTATACGACGTGAAGAGCTGCGGATTCTGACTGAGAGAACCAGAGACGAGAAGAGACAAGAGAGAACAGACAGAAGAGCATCTTTCCATTTTAGAACATATTCTGGAAATCTCACGCAGACACACCCACAACCGGTTCCCTCTTTCAGATGTTCATCCCACTCCAACCTGACCCTCAGCCTGAGTATGAGTGTACGGGCACGGCAAAACaacatgcttaaaaaaaaaagtgatttttaaaaatactgttgAACCACTGCTGAAAACACTGTCTAGCCTGTATTTCATCTGTGCAGGAACAGgttccttgtttttttgcatttgctgTGGTGATTGATGCTTTAACAAGTGGAGCTCACCAGAAATTGAGAACAATCAGAAGCCCCTTTCACACTTAGATGTGAACTCAGGAATGTAGCAGCAATCAGTAACTTAAAAGGAGGTTTTTTGAGTGTGAACACAAGCTGAACAAGTTGAAATCCTGGTAAATTAGGGCTATGTTAATATGTATTTGGatattaagaaaagaaaagaaaagaaaagaaaacaaaaaaaaacaagggatTTCCCTCTTTTCgtttataaaaacattattgtgTCCAcacataaagctctggaaaaaatgaagagacttcaaaataatcagtttctctgattttgctatttataggtatatgtttgagtaaaatgaacattgttgt
>TU296917
aaaaaagacagacagaaagaaagacatggAGAAAGACGGATTAAAACAAATGTTACTTTGCTTTGGTCTATTCACAGTGGCTACACCTTTGTCTGCATATAGACTAGAATATGTGGCTGTATACAATGTTAGGAATATTTACATGTGTTTAGTCGTGGTCATGTGAGCTGAGTACTGGAAGGGAGAGTATAAAACATTGAGAATGAAGGAGGACTTCATGTCGGTATGACGAGGAGATTAACAGTCTGAATGCTCTGATCGGAATGAGAAAAGCACCTCGATTTCTCCTCATCTGTTTTCAGAGCTTCTGTGTGTGAACTAAAACACAGGTCTCAGGCAGTGTGGATGCAGGGCTACATTTAGACTGTGGTGAACACAAGAATTCACTGAATGGAAGGTTTCATGGTAAGAGGATGACAACCAAAactgaagcaaaaaaaatgacCAGACCTGCAATTCAGAGTAAACTAGCAAAAACAGGAACATTCTGATTAATACTGCTGGTCTTTTAGCTTTTAAGAACAGTTCAGAACAGAGACCATACTGAGGTCATAACCATGATGAAAGTGAAGCAGCTATGCTAGTGGTAGAGTTGAGTTGAGTGGAGGGTCAGTTGCTATGAGCTGTAAGATTCAGCACAATGACTGTTTCACTGCTAATTTGATTGGCaagaaataatttacattttaatatcaatgaaatattaataacaattaaCTTGAAAACTGAGTTTCCTGAAGCAACCCCATAATGGGCTAGGCTATGCTGTTGCAGATGTTTGGCTGTTTGGCTAGGCTGTCGTAGATAATTGCAAAGGCAAACCAGGTGGTTACTTGTGGTTACATGTTGCCAATGATATATAATGTGGTATACTAGTGTACTGTATATCACTAATGAACCATTCATTTCTATTAGCAGAAAATCCACTGCTAAGCGGAAACTGTTAATCTGACAAAATAAAGCTGTATACAAGCTTTCTGAGTACAATCAGAATTAATTGGAGGCGTATCCATATCACAAAAACTGCTAAATACGGATTTCCCCATGTTTGTTATTATCAGAGACATTGACTCCGAACTGccaatgtataaaaatgtagtGATAGTTCTGAACATCTGTTATaggttttaattaatgtttttaaatatagcaAACATTGTAGCTAAACTATTTCAAGGGGATTAATTTGGGTGTGTTTCCAATATGATCAAAATCACAATAGTAAAGTGAAATTTGTAAACTAcacataatgtttatatgaaaaCTGTGAGCAGTCACTGAAATGTACCTTACAAATGGTGATGGCAAACGATCCCTCCACTGGATTACTTGTTAAAGGATATGAGACACATATATCTGTTAAACCCACAACATTTCCTGTGTTACCACAAAATAGCTTGAGGTGCCATTtctatatagatgtatatatatatataaaaatatacatgatatatattttttaatatcccattcatatttattttaaagaatctgttctgtaaaaacaacaaagttatatttatatatagtgtatagatatatagatcTCCCTTCTTTTGTGACCAAATAATGTTTATGATTAGTATTTCACAACTGCAGATGATATTTACGCATACGTTATCTATGCTACTAGTGAGAGCAGTAGCTCTGCCCAGCGTTGCGTGACCTGTGTGATGTCAAACCTAGACATCCCGTCTCCGCGGAGATGACTATAtcgtatttatatatatgaccTTCAGACAGAATGCTACTGTATTCATGCACACATGCGATTCACTTGACATGACTTGAGTGTGTGCTGCAACGTTTCGCACTATTCTGCATGACATTACGGTCTGAGGAAAATCCAAAACAGGCATAAAATATcatttggctgaatattttaaagattctaCTTAGAAAAATAGTACTTCTAGATAAAGTGATTAGTATCTGATAGTGGAGGAACCTCTGTGCTGGGCCTCGGCAAGACAAAGGTAATATTAGGACACCACAACAGTTCAGAcgcttgttttgttttctccaCTTGTGAGTGAAGAGAAAGCACTCGAGTGTCCTGACTTGACTCGCAGTCTAAGTATCTGTGGGTTCTCCCTGGCTTGACCACGCCACTCTAAGAGTTCCATGACATCAATATTAATGCTGGTACACAGAAATCCATTAGTGCAGGTGCTCGTCTCCCATTAGTGCCGTAGCTGTGATATGAGTCCATTATACGACGTGAAGAGCTGCGGATTCTGACTGAGAGAACCAGAGACGAGAAGAGACAAGAGAGAACAGACAGAAGAGCATCTTTCCATTTTAGAACATATTCTGGAAATCTCACGCAGACACACCCACAACCGGTTCCCTCTTTCAGATGTTCATCCCACTCCAACCTGACCCTCAGCCTGAGTATGAGTGTACGGGCACGGCAAAACaacatgcttaaaaaaaaaagtgatttttaaaaatactgttgAACCACTGCTGAAAACACTGTCTAGCCTGTATTTCATCTGTGCAGGAACAGgttccttgtttttttgcatttgctgTGGTGATTGATGCTTTAACAAGTGGAGCTCACCAGAAATTGAGAACAATCAGAAGCCCCTTTCACACTTAGATGTGAACTCAGGAATGTAGCAGCAATCAGTAACTTAAAAGGAGGTTTTTTGAGTGTGAACACAAGCTGAACAAGTTGAAATCCTGGTAAATTAGGGCTATGTTAATATGTATTTGGatattaagaaaagaaaagaaaagaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296916 True 2911 lncRNA 0.37 1 24134176 24137086
TU296917 False 2750 lncRNA 0.38 1 24134176 24136925

Neighbor

gene id symbol gene type direction distance location
pdzd7 pdzd7,LOC107690160,LOC107678494 coding upstream 3431 24092177 ~ 24130745 (+)
LOC103042015 LOC108441770 coding upstream 156584 23970690 ~ 23977592 (+)
LOC111196020 LOC105007542 coding upstream 164845 23965642 ~ 23969331 (+)
LOC111195965 LOC105007542 coding upstream 172075 23959074 ~ 23962101 (+)
LOC111196037 LOC105007542 coding upstream 180371 23950856 ~ 23953805 (+)
LOC103045799 cpxm1,cpxm1a,LOC107678553,LOC107708467 coding downstream 292586 24429672 ~ 24446638 (+)
LOC103040903 NA coding downstream 358567 24495653 ~ 24507303 (+)
LOC103042321 LOC103042321,LOC108441753 coding downstream 374255 24511341 ~ 24515822 (+)
mrps26 mrps26 coding downstream 380328 24517414 ~ 24520954 (+)
LOC103043568 htra2,LOC107690150,LOC108263241,LOC106589831,LOC104960364,LOC103358855 coding downstream 385725 24522811 ~ 24530192 (+)
G218795 sfxn3,LOC103040609,LOC108263463,LOC108441766,LOC107708462,LOC107678536,LOC105911632 non-coding upstream 42623 24082939 ~ 24091553 (+)
G218754 NA non-coding upstream 114718 24011875 ~ 24019458 (+)
G218743 NA non-coding upstream 188364 23945558 ~ 23945812 (+)
G218742 NA non-coding upstream 195902 23938070 ~ 23938274 (+)
G218688 NA non-coding upstream 353672 23780213 ~ 23780504 (+)
G218836 NA non-coding downstream 144619 24281705 ~ 24282056 (+)
G218841 NA non-coding downstream 180556 24317642 ~ 24318194 (+)
G218842 NA non-coding downstream 181181 24318267 ~ 24321592 (+)
G218853 pomk non-coding downstream 322307 24459393 ~ 24461309 (+)
G218893 NA non-coding downstream 337738 24474824 ~ 24479222 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 62550 24064495 ~ 24071626 (+)
G218758 NA other upstream 70388 24059211 ~ 24063788 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other upstream 105195 23981135 ~ 24028981 (+)
G218651 NA other upstream 425933 23696577 ~ 23708243 (+)
kcnma1 kcnma1,LOC108263740 other upstream 1316062 22563798 ~ 22818114 (+)
LOC103046104 LOC108441759 other downstream 306205 24443291 ~ 24466867 (+)
G219050 NA other downstream 705216 24842302 ~ 24842533 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other downstream 1024641 25161727 ~ 25174708 (+)
G219171 cunh4orf32,c3h4orf32 other downstream 1119864 25256950 ~ 25302587 (+)
LOC103047652 NA other downstream 1301633 25438719 ~ 25442581 (+)

Expression


Co-expression Network