G218842


Basic Information

Item Value
gene id G218842
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24318267 ~ 24321592 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296961
ctctcttcgcttttagactcttttaccccgtttttctgcactagaaatgcgcaccctcgtcgcttttagactcttttaccccatttttctgcgctagaaatgcgcagcctctccgcttttagactctttggcccgtttctgacacctagcgttcaaactttgaatctcgcattataaaaacctgcttaacagcgggccaacttttattctatttctaaaatacctcgcaggccgctccaaaaaagcaaatggcccgcaggccgtagtttAGACACCCCTGCCTTAAAGACTTAAGTTTAAGACAAACTTCCCCTTTAATTATACAGCTCAATGGACTGATACAATACATAATGGAGGGAGAACTTGAATGCTAGTGAATAGTCAGCAGTGTGAGTAATACATTAACATGCTACAGGTAGACAGTCTATTCAggatattatgaccacctccttgtttctacactcaatGTCCATTTCTCAGCCTCACTGACCACTATAATTACAGAGTGTGGTCCTTTTTGTGTCGTTCTGGTAGGtgtgaatcagacacagcagtgctgctggagttttaaacattGTGTCTACTCAGTGTTTATGCAATTAGACACTCTTAttcagctgctccaccttgtagaccAGGGGTAGATAATTAATTTTGGCCATGGGCCAAAATTTTCCATGCcgttacgtggcgggccacaaaaaaaaaaatctgttttggaaaataaagtgtaatgggatggagtgctacagactagtagctctctcagctccagcccagagggttgttgaacccaattgcataacagttgatctcaaagcaggtaaacctaacaagaaaggaaaaaataaataaataaacacaccgctcctcacgcgtgatgtcgtcagggtcgcagtacaatacactaccgctgccccggctagtgaattggctGGGAAAAAACAGCCTTATAAGGACATAGGGAGCCCAAAAATGGACGGAAAACCAATAAAGGGCAAAAACTAAAGTCACGGCAAGcatgacagagagacagggggatGGAAACAAAAGTtagccagagaagcattttatttatttatatttccttTATTGTTCATCATAGTTCAAACTACCTCACGAGCCAGATGTTTAATGCTTGCCAGCCACATCTGGAACGcaggccgcctattgccgacccctgttgtAGATCGTCTGCTCTAGCTCATCTGTACAGTTTCTGATCAGTGGTCATatgatgctgcccacaggatgctgcttgCTGGACATTTTTGGTTGATCAACTGTTTTCAGTCCAGCAGGGACACtgtagtgtttaaaaactccagcagcactgctgtgtctgatccactcgtaccagagcaacacacactgcacactgctaacacaccaccaccatgccagtgtcactgtACTAATCCCTGAACTGTGATGGTCCTGTCTCACCTTCACCATTTGattgtacactctaaaaaaaagaggtacgatatgagtacttttttgtactcaaaggtacactcttcataattgtaccctcaaaggaacagtattggtctttacagggtcagatgtgttccctctgaagtataaaagtaatttccaacagcaataagtacaaatttgtaccaatTAACCAGCcaaaaaggtacattcagtattctgtatcactgtacctataaacaatatatacttaaattgcgcattttttatttgaaagccagacaattttggatcatcaagtttttgagccatatttagttgatgataatgtttataatttttataatctttactggcacaaaaaccatgggtacttttttgtacctcaatataaggtacagccccagcgacaagctttgtacccttttaagtacaaatctgtacttatttttcttggtGTGTAGGGAAAAAGAGGCTAAGAAACAGGTTGATAAAATACAGGTATAGGTAAATATACCgtatatatgtactgtatatacattttcAACTTAAGCTAAACATTTTGTTCTCAGAACAAATCTGTGCATTTGTTGAGGTCCGATGGACTGGCTTGCTATTCTGAACACATTGGCATGCTGAAAACAAACTCATGCGGTGGAGTAGGCGAAGCTTCCGGCAGGCAGATCACGCAGATACAAAGAGCGCTTGAATCTTTCCTCGCAGCAGATGGGGAGCAAACAGGAAAACTGATTCAGCCTGCCTGAAAATCCAACAGGCAGAACAACCTGTTCCAGAGCCCTTAACTTAAACATGCTCTGGCTTCTGCTCTGCTTACTGCCAGCAGCGCTGCCATTCACAGCTTTTTACACCCTATTTAGTTACACAGTAATTACACCACTGTAACAGAGATCAGGAAATCTGATATGCATTGTGTAGGTATTATACAGGATTTCAAGGCAATTAAAATGATGTGATTTGACCTGCCTAGAAAAAGGCTGTTACAGTTCTATTATTCCtgaaacaaaaatgatgcaacACCAACACAAGAGCCAAAGCAAACTTTCCTGCGGGCGTCAACATTGTTCATTGGCTCTGGGAATTAGTGAGGCAGAATGTAAACAACCCAAAGTCCGAGCTTTCACAACAAGGCCCACTAACTAATCAAAGGGTTGAGAAACATGGGAAAACAGTGAATTCACTTTAGttatcttctttttctcttacttTTCATACTGGAATACCAGTCAGAGAggcatttatacatttataaaaagtgAATTCACAATTGTTATCTTCCTTTACACTTATCGTTCCTACTAGAATGGCATTCAGATCCATATGTTTACGGacagagaccacttaaataaatttgaaatgacacatcgtTTGACTGAAGTGTTGACCTTAACCCAGCTTTAACTCATCAGAACAAAatgaaatcatttaaataattgagcagtttattaatgctttacttattgtgataaatatcGCTCCcaagctttatttttctccccctcagaattttttttccctctcgaATTCACAGTTCTCCTTGCATGCTGCGTGTGAATTGCCTGGGTCTGCTCTTTTTGCTCGAGTGAGGTTTTTGCGCTCTAGTGTAGAAAGAGGGGTGGTTTTAACAGTTTAggggcggggtcagggtcacctccctcagcgaatgtTATTGGCCGATATCTCCAGGGGTCGTGACAGACGACCTTCAGAAACAACGACAGAGGGAGAGtaagctagctatgctaaaatcCAAACAACCCGCTCTCCTGCGCTTTACACTTGAAATGGAACTTGAATTGAAAAATGGAAAGAATTGAATTATGGAGGATGTAAATAATGCCCAAGGCAAAAAACTATACACACTTTAG

Function

NR:

description
PREDICTED: mucin-20-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296961 True 3326 lncRNA 0.41 1 24318267 24321592

Neighbor

gene id symbol gene type direction distance location
pdzd7 pdzd7,LOC107690160,LOC107678494 coding upstream 187522 24092177 ~ 24130745 (+)
LOC103042015 LOC108441770 coding upstream 340675 23970690 ~ 23977592 (+)
LOC111196020 LOC105007542 coding upstream 348936 23965642 ~ 23969331 (+)
LOC111195965 LOC105007542 coding upstream 356166 23959074 ~ 23962101 (+)
LOC111196037 LOC105007542 coding upstream 364462 23950856 ~ 23953805 (+)
LOC103045799 cpxm1,cpxm1a,LOC107678553,LOC107708467 coding downstream 108080 24429672 ~ 24446638 (+)
LOC103040903 NA coding downstream 174061 24495653 ~ 24507303 (+)
LOC103042321 LOC103042321,LOC108441753 coding downstream 189749 24511341 ~ 24515822 (+)
mrps26 mrps26 coding downstream 195822 24517414 ~ 24520954 (+)
LOC103043568 htra2,LOC107690150,LOC108263241,LOC106589831,LOC104960364,LOC103358855 coding downstream 201219 24522811 ~ 24530192 (+)
G218841 NA non-coding upstream 73 24317642 ~ 24318194 (+)
G218836 NA non-coding upstream 36211 24281705 ~ 24282056 (+)
G218799 NA non-coding upstream 181181 24134176 ~ 24137086 (+)
G218795 sfxn3,LOC103040609,LOC108263463,LOC108441766,LOC107708462,LOC107678536,LOC105911632 non-coding upstream 226714 24082939 ~ 24091553 (+)
G218754 NA non-coding upstream 298809 24011875 ~ 24019458 (+)
G218853 pomk non-coding downstream 137801 24459393 ~ 24461309 (+)
G218893 NA non-coding downstream 153232 24474824 ~ 24479222 (+)
G218920 NA non-coding downstream 245725 24567317 ~ 24570732 (+)
G218948 NA non-coding downstream 267718 24589310 ~ 24641047 (+)
LOC111196006 NA non-coding downstream 468485 24790077 ~ 24792821 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 246641 24064495 ~ 24071626 (+)
G218758 NA other upstream 254479 24059211 ~ 24063788 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other upstream 289286 23981135 ~ 24028981 (+)
G218651 NA other upstream 610024 23696577 ~ 23708243 (+)
kcnma1 kcnma1,LOC108263740 other upstream 1500153 22563798 ~ 22818114 (+)
LOC103046104 LOC108441759 other downstream 121699 24443291 ~ 24466867 (+)
G219050 NA other downstream 520710 24842302 ~ 24842533 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other downstream 840135 25161727 ~ 25174708 (+)
G219171 cunh4orf32,c3h4orf32 other downstream 935358 25256950 ~ 25302587 (+)
LOC103047652 NA other downstream 1117127 25438719 ~ 25442581 (+)

Expression


Co-expression Network