LOC103046104 (LOC108441759)


Basic Information

Item Value
gene id LOC103046104
gene name LOC108441759
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24443291 ~ 24466867 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU296989
CTCAACTTTTGGAATTAAGGTTGTAGTCTATTACGTATTAAAGTCTATATGCATAGTCTGACTTTTTTTGCAGTTTCATAATTCAGAGGATTCAGTCACTTTTAGgaactttttttatttaagaaatctTATAACACATGCCACATATCAAGGGGCATGGAAATATTATCTTGTTCCAAGATATTTGCCATGCCCTATGGATATTCTAGTTGTTTACTAAACCGGTATCTGAACCTCTATTTTTTACTCACTGTTACAGAGCACagctaaagcatgagtagactgataaatcactgtgctgatcctGTTAAAGAGCACAGCAAAAGCATAAATAGACGGATAAATCATTGTGCTGATCAGTTTTTTATCTCACGGTTCCAGAGCGGTTCTAAAGCAtgagtaaattaataaatcactgTAAATCACCCCTAACAACTCCTACACAAAAGTGATAAAGTAATCTTTGCTGATTGCTGACTTACAAACtagttttctctttcttttcctaagGGCTCTCGACATGGACCCAAGCCAAAGAGACCATGAATCTCTGCTTGCCAAGAACTTTACAGCAGGGCAAAGCTGAACAAAGGGTCACACCTGTAATGAGTGGATGATGGGCCTCAGGGACCTATGATGAGAAGAGGCCAAGGACTATTTGGGTCAGTTGTTTTGAACACAATGTTTTGGGAATGCTGGATCTTcttaaatagaaaatattaaaatCTTTTATAAATAAAGGAATTCCATTACAGGAATGTGGGGTGATGTAGTGGGCCGATGTGAATATACATGATGATCATATTTTCATGTCTGTTTACAGTTAACTAATTGAACTGTCTATTGAACCGATACAAACCCATCTTTAACAGccatgatttcatgttttttaaagccttacacacactgtatatttatagattaatataaatatgtaaatatgccCTTTGTATCAATATTCCATTttcatcatatttaaaaaaacaaccactGAAAGAATAACAACAATGTTCAGATACAATTGGCTGTTCAGTTTTGTATGTTGCTGTCAATCTCTAGTTATATTATGTATCTTGCATCTTTGGTGACTGAAGgcagtgt
>TU296990
gtaatgtaatgtaatgtaaTGTTTACAGTTAACTAATTGAACTGTCTATTGAACCGATACAAACCCATCTTTAACAGccatgatttcatgttttttaaagccttacacacactgtatatttatagattaatataaatatgtaaatatgccCTTTGTATCAATATTCCATTttcatcatatttaaaaaaacaaccactGAAAGAATAACAACAATGTTCAGATACAATTGGCTGTTCAGTTTTGTATGTTGCTGTCAATCTCTAGTTATATTATGTATCTTGCATCTTTGGTGACTGAAGgcagtgt
>XM_007236427.3
cacacacgagcgcGTTAGAATGAtgtagtttggtgtgtgtgtgtgtttctgctgatggagagagagacggggacCCGCACGGAGCGCAGGGTTCGGTTCCGCGTGGCGTCCGCGCGCTCCGGCCGCGTGCTGGCGGAGGTTTTTCGGGAGGAGGCGTTTGAGGACCCGGCGGACTCGGACACCACCGGCAGCTCCGAGCCCGAGCGCGCGGCCTCGCCCGCCGCCAGCGAGGCCAACAGCCACCTGAGCGTCCCGGCGGGAGCGCGCGCGGACGACAGCGGGAGCGAGCCTGACGAGCTGCTTCTGTACGCGAGCGGAGCGAAGGAGAGCCTGTTCAGCGGGAAGCGCGTGACCATCCGCAGCAAGAACGGCACAGTGCGCGGAGTGAGGGACAAAGTGAGCGCGGGACAGATGCTCTTCAACTCGCTGGCCCGAGTGTACGGGGGCTCTCGACATGGACCCAAGCCAAAGAGACCATGAATCTCTGCTTGCCAAGAACTTTACAGCAGGGCAAAGCTGAACAAAGGGTCACACCTGTAATGAGTGGATGATGGGCCTCAGGGACCTATGATGAGAAGAGGCCAAGGACTATTTGGGTCAGTTGTTTTGAACACAATGTTTTGGGAATGCTGGATCTTcttaaatagaaaatattaaaatctaagagaaaaagaacaagacACTTTTATAAATAAAGGAATTCCATTACAGGAATGTGGGGTGATGTAGTGGGCCGATGTGAATATACATGATGATCATATTTTCATGTCTGTTTACAGTTAACTAATTGAACTGTCTATTGAACCGATACAAACCCATCTTTAACAGccatgatttcatgttttttaaagccttacacacactgtatatttatagattaatataaatatgtaaatatgccCTTTGTATCAATATTCCATTttcatcatatttaaaaaaacaaccactGAAAGAATAACAACAATGTTCAGATACAATTGGCTGTTCAGTTTTGTATGTTGCTGTCAATCTCTAGTTATATTATGTATCTTGCATCTTTGGTGACTGAAGg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU296989 True 1101 lncRNA 0.35 3 24465704 24466867
TU296990 False 306 lncRNA 0.29 2 24443291 24466867
XM_007236427.3 False 1051 mRNA 0.49 2 24463884 24466861

Neighbor

gene id symbol gene type direction distance location
pdzd7 pdzd7,LOC107690160,LOC107678494 coding upstream 312546 24092177 ~ 24130745 (+)
LOC103042015 LOC108441770 coding upstream 465699 23970690 ~ 23977592 (+)
LOC111196020 LOC105007542 coding upstream 473960 23965642 ~ 23969331 (+)
LOC111195965 LOC105007542 coding upstream 481190 23959074 ~ 23962101 (+)
LOC111196037 LOC105007542 coding upstream 489486 23950856 ~ 23953805 (+)
LOC103040903 NA coding downstream 28786 24495653 ~ 24507303 (+)
LOC103042321 LOC103042321,LOC108441753 coding downstream 44474 24511341 ~ 24515822 (+)
mrps26 mrps26 coding downstream 50547 24517414 ~ 24520954 (+)
LOC103043568 htra2,LOC107690150,LOC108263241,LOC106589831,LOC104960364,LOC103358855 coding downstream 55944 24522811 ~ 24530192 (+)
LOC111195941 NA coding downstream 113233 24580100 ~ 24585465 (+)
G218842 NA non-coding upstream 121699 24318267 ~ 24321592 (+)
G218841 NA non-coding upstream 125097 24317642 ~ 24318194 (+)
G218836 NA non-coding upstream 161235 24281705 ~ 24282056 (+)
G218799 NA non-coding upstream 306205 24134176 ~ 24137086 (+)
G218795 sfxn3,LOC103040609,LOC108263463,LOC108441766,LOC107708462,LOC107678536,LOC105911632 non-coding upstream 351738 24082939 ~ 24091553 (+)
G218893 NA non-coding downstream 7957 24474824 ~ 24479222 (+)
G218920 NA non-coding downstream 100450 24567317 ~ 24570732 (+)
G218948 NA non-coding downstream 122443 24589310 ~ 24641047 (+)
LOC111196006 NA non-coding downstream 323210 24790077 ~ 24792821 (+)
G219067 NA non-coding downstream 479857 24946724 ~ 24947071 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 371665 24064495 ~ 24071626 (+)
G218758 NA other upstream 379503 24059211 ~ 24063788 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other upstream 414310 23981135 ~ 24028981 (+)
G218651 NA other upstream 735048 23696577 ~ 23708243 (+)
kcnma1 kcnma1,LOC108263740 other upstream 1625177 22563798 ~ 22818114 (+)
G219050 NA other downstream 375435 24842302 ~ 24842533 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other downstream 694860 25161727 ~ 25174708 (+)
G219171 cunh4orf32,c3h4orf32 other downstream 790083 25256950 ~ 25302587 (+)
LOC103047652 NA other downstream 971852 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 2733585 27200452 ~ 27236616 (+)

Expression


Co-expression Network