G218893


Basic Information

Item Value
gene id G218893
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24474824 ~ 24479222 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU297025
tttttccattCATTTGGTTCCTAGTAGTAACAGTACATCTCCAAAAAGTACATTAGTCATTACATCACACAAATTTTACACCCAAactcacacactaaaacacacacatagagcAATAAAACTCTTCTAGAAAAAAGGCAACTCTGCGGTTTATTATTTGGGTTTGTTTCTGTAAATATTACTGCCATGGTGCTCTTCTTCCCAAAACATGGTTGGTGactttCTTGTTAAAGAGCCGAGCGTTGAGGCGGTACGTGCTGTACTCTGCTTTCCTCTTCTCTTCCTGTTTCCTCTTCTGAACTTCAGGGAGTTGAGCATATATCCGCTTGGATCTTTGGACCATCTCCTTCACTGGAATGACTCGCTTAGAGGGCAAAGGAGGTGGAGCTGAGGAACAGAGATGTATCAAGTTAGTGTAAAGTACATTCCATACAGTGACAgcttctttttaaactgtgatGAAGGCTTAAGTGCTGTGAGCAGTGTCAGTAACTCAAACCAACCTGCTATTGGCTGCTGGAGGGGTAAAGGTCGATTGAagagctcctctctctctctgttaaagACAGCCTGCATCTTCCTCTCCTCCGCTagagaggaaccaaGGCAGAGGGTTTTCTGCGGTCAGTCTCTGAAGAGGCTTTTGGCTCAAGGGGCTTCTCTCGTTCCAGCTGAATGTGTCGTTCTCTGAGTGGTTCCCTTAGAGACTGTCTCCAGGGCCGAGTCCTACTGTAGGGCTCAAACCAGGCATGGCTTGCAGACGGCACTCCCTCAGACTGGGGCTCGTTTTCTTTACGTGCATCCTGCTTCATCTCATCAGCAGGCACAAACCATGATAcacCTGGGTAGCAGGTCTGATTGCTCTTGTGGATGCCTTCTCTCCTCAGCACTGTTTGGGAACGAGCAGGAACACCCCTGGACACCTGTATTTCTGCATGGGTTGATGCAGGAGTCCTGGTGTCTCTGGCATTACATGGTGAAGGGAAGATAGTGCCAACATCTCGTGTATGTCTGCGAGTGCCGTTTACTACAATCTCCAGATCACCTGTAGAACAGGGGACACAATTga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU297025 True 1069 lncRNA 0.47 5 24474824 24479222

Neighbor

gene id symbol gene type direction distance location
LOC103045799 cpxm1,cpxm1a,LOC107678553,LOC107708467 coding upstream 28186 24429672 ~ 24446638 (+)
pdzd7 pdzd7,LOC107690160,LOC107678494 coding upstream 344079 24092177 ~ 24130745 (+)
LOC103042015 LOC108441770 coding upstream 497232 23970690 ~ 23977592 (+)
LOC111196020 LOC105007542 coding upstream 505493 23965642 ~ 23969331 (+)
LOC111195965 LOC105007542 coding upstream 512723 23959074 ~ 23962101 (+)
LOC103040903 NA coding downstream 16431 24495653 ~ 24507303 (+)
LOC103042321 LOC103042321,LOC108441753 coding downstream 32119 24511341 ~ 24515822 (+)
mrps26 mrps26 coding downstream 38192 24517414 ~ 24520954 (+)
LOC103043568 htra2,LOC107690150,LOC108263241,LOC106589831,LOC104960364,LOC103358855 coding downstream 43589 24522811 ~ 24530192 (+)
LOC111195941 NA coding downstream 100878 24580100 ~ 24585465 (+)
G218853 pomk non-coding upstream 13515 24459393 ~ 24461309 (+)
G218842 NA non-coding upstream 153232 24318267 ~ 24321592 (+)
G218841 NA non-coding upstream 156630 24317642 ~ 24318194 (+)
G218836 NA non-coding upstream 192768 24281705 ~ 24282056 (+)
G218799 NA non-coding upstream 337738 24134176 ~ 24137086 (+)
G218920 NA non-coding downstream 88095 24567317 ~ 24570732 (+)
G218948 NA non-coding downstream 110088 24589310 ~ 24641047 (+)
LOC111196006 NA non-coding downstream 310855 24790077 ~ 24792821 (+)
G219067 NA non-coding downstream 467502 24946724 ~ 24947071 (+)
G219069 NA non-coding downstream 529919 25009141 ~ 25009529 (+)
LOC103046104 LOC108441759 other upstream 7957 24443291 ~ 24466867 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 403198 24064495 ~ 24071626 (+)
G218758 NA other upstream 411036 24059211 ~ 24063788 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other upstream 445843 23981135 ~ 24028981 (+)
G218651 NA other upstream 766581 23696577 ~ 23708243 (+)
G219050 NA other downstream 363080 24842302 ~ 24842533 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other downstream 682505 25161727 ~ 25174708 (+)
G219171 cunh4orf32,c3h4orf32 other downstream 777728 25256950 ~ 25302587 (+)
LOC103047652 NA other downstream 959497 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 2721230 27200452 ~ 27236616 (+)

Expression


Co-expression Network