G218948


Basic Information

Item Value
gene id G218948
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24589310 ~ 24641047 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU297100
aaaaaaaaaaaaaaaaaaaagaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataataaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU297100 True 642 lncRNA 0.00 2 24589310 24641047

Neighbor

gene id symbol gene type direction distance location
LOC111195941 NA coding upstream 3845 24580100 ~ 24585465 (+)
LOC103043568 htra2,LOC107690150,LOC108263241,LOC106589831,LOC104960364,LOC103358855 coding upstream 59118 24522811 ~ 24530192 (+)
mrps26 mrps26 coding upstream 68356 24517414 ~ 24520954 (+)
LOC103042321 LOC103042321,LOC108441753 coding upstream 73488 24511341 ~ 24515822 (+)
LOC103040903 NA coding upstream 82007 24495653 ~ 24507303 (+)
LOC103045503 sfxn5,sfxn5a,LOC108262907 coding downstream 17384 24658431 ~ 24678113 (+)
cdc25b cdc25b,LOC108417292 coding downstream 138562 24779609 ~ 24787340 (+)
ap5s1 ap5s1 coding downstream 153843 24794890 ~ 24798599 (+)
rrh rrh,LOC107666394,LOC107585226,LOC107733708 coding downstream 543587 25184634 ~ 25192379 (+)
metap1 metap1,LOC107733733,LOC107556924,LOC107695030 coding downstream 585394 25226441 ~ 25241001 (+)
G218920 NA non-coding upstream 18578 24567317 ~ 24570732 (+)
G218893 NA non-coding upstream 110088 24474824 ~ 24479222 (+)
G218853 pomk non-coding upstream 128001 24459393 ~ 24461309 (+)
G218842 NA non-coding upstream 267718 24318267 ~ 24321592 (+)
G218841 NA non-coding upstream 271116 24317642 ~ 24318194 (+)
LOC111196006 NA non-coding downstream 149030 24790077 ~ 24792821 (+)
G219067 NA non-coding downstream 305677 24946724 ~ 24947071 (+)
G219069 NA non-coding downstream 368094 25009141 ~ 25009529 (+)
G219074 NA non-coding downstream 400190 25041237 ~ 25041789 (+)
G219102 NA non-coding downstream 443410 25084457 ~ 25084856 (+)
LOC103046104 LOC108441759 other upstream 122443 24443291 ~ 24466867 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 517684 24064495 ~ 24071626 (+)
G218758 NA other upstream 525522 24059211 ~ 24063788 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other upstream 560329 23981135 ~ 24028981 (+)
G218651 NA other upstream 881067 23696577 ~ 23708243 (+)
G219050 NA other downstream 201255 24842302 ~ 24842533 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other downstream 520680 25161727 ~ 25174708 (+)
G219171 cunh4orf32,c3h4orf32 other downstream 615903 25256950 ~ 25302587 (+)
LOC103047652 NA other downstream 797672 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 2559405 27200452 ~ 27236616 (+)

Expression


Co-expression Network