LOC103045183 (emx1,LOC103045183,LOC108441775,LOC108263581,LOC107567848,LOC107678523,LOC107733702,LOC107690190,LOC102233543,LOC103458176,LOC103150078,LOC107097582)


Basic Information

Item Value
gene id LOC103045183
gene name emx1,LOC103045183,LOC108441775,LOC108263581,LOC107567848,LOC107678523,LOC107733702,LOC107690190,LOC102233543,LOC103458176,LOC103150078,LOC107097582
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24683237 ~ 24700649 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU297161
CCACGCCCACAGGAACTGTGACACGCCCAGTAGCCTCATTTTCAATTTATCCCAATTCGGCCATGAACTCTGTTTGATTCTCTCATCTAAAGAAACACGTTGGACGCTGCCAAGTGGAAGGGGGCTCAGAAGATTGAAGACCAAAACCAGCCGGTTCCGAGATTGCGTCTTCCAGCGGGCGACCAGGCTGTGGAACAACCAGTTGAACAGAAACGAAGTAGCCCATGACTCGCTGTTGCTGCACGGGCCCTTCGCCCGCAAGCCGAAGCGGATCCGCACggccttctctccctctcagcTGCTGCGGCTGGAACGCGCTTTTGACAAGAACCACTACGTGGTGGGAGCAGAGCGCAAACAGCTCGCCAACAGCCTCAGTTTGTCCGAGACCCagGTGAAAGTTTGGTTCCAGAACCGCAGGACCAAGTACAAACGTCAGAAGCTGGAGGAAGAGGGACCAGACAATACACAGAAGAAGAAGGGCAACCACCACATCAACCGCTGGAGGATTGCCACCAAACAGGCCGGCTCTGAGGACATAGATGTCACATCTGATGCCTAGAATCCATGTGAACCAGGCCTAAACTCACACACCAGGCCAGAACAAGccctatttatttatgttcacaGCCATGATCATGTTTGAGTTTAAACAGGGCTGCTGAGGACTGTGTACATGCATGTATGTGTCTttgagtgagacagagagagggagtgcaGAAATGTGGTCAGTATGAAGGCAGAGTCTGTTCAACTCTCTGTACATACTACAGTGACTGAAAATCTACTCAGCCGAACCATGATTTGCTCACTTTCTCTACAACACTGGCACTGGCCGAACTGAACATGgcacattgttttatttgttaacaACACTGGCAATTATCAAAtaattgtatttctttttttgttgttctttttattattgtttgtatttgtatCAAAGTCCCAGAATCGAATATGTAAGTTGAATTCTATTCTAAGTTAATGTCATCTTTTTCCAGTCAACTAGCAgctttgtatttatatattaaaaaacacaacactcaTTAAGAATGGTTATAAAGCTTATACTACACTTTTTGTGCTGGTTATGTACAGGTATACATTTTAACGTATTCATGTACACTCAGACCTGAGAACTTTACAATTACCATAAAAGCCCTTGTACAAATGCTAATTTCTCTGTAATTTGATTAAGGTTTTTTTCTGTGGCAGCTGACAACAgt
>XM_007236424.3
AGCGGCGCAAACACGACCCCTGCAAATCGCCCCTCCAATCCAAATGTGCACAACCTCCGCGCGCAGCCTGCAGCTCTTCACTCGCACCCGCGCTGCTCGCTCATACACGCGGTCCCGAACTCATGGACCAAGCGCAGAGCCCGATCTGAAGCCGGTCTGTTATTTCGCTCCGAGCTTTTTCTGAGGACCATGAGCGCTTGAGCGAAGACCCCCGCTGGCAGAGGTCATCTCACGGGTCCTGGTGAGGACGGAAAGGCCTCGCGCACTACAAGCTCCCGTCGGGGGACGATGTTCTCGGCCGCAGGGAAGCGCTGCTTCACCATCGAGTCTTTAGTGGCGAAGGAGAACCCGTTATCGGGGGAAGAGCCCGTGCGCCCCGCTGCTCTCACTTACACGCCCCCCGCAGACTCTTTCCTGGGCGGCTATCAGAGCCCCGCGGGCCGGGCGCTCTACCCCAGCCCAGAACTTGTGTTCCCGGACGCGGTGAGCCACGCGCCCCTGAGCGCACACCCGCACCAGCTCGGTGGAGCGCACCTTCAACACCCGCACTTCTTCAGCGCGCAGCACCGAGAACCCATCAACTTTTACCCCTGGGTGTTACGGAACCGGTTCTTTGGACATCGGTTTCAAGGAAACGAAGTAGCCCATGACTCGCTGTTGCTGCACGGGCCCTTCGCCCGCAAGCCGAAGCGGATCCGCACggccttctctccctctcagcTGCTGCGGCTGGAACGCGCTTTTGACAAGAACCACTACGTGGTGGGAGCAGAGCGCAAACAGCTCGCCAACAGCCTCAGTTTGTCCGAGACCCagGTGAAAGTTTGGTTCCAGAACCGCAGGACCAAGTACAAACGTCAGAAGCTGGAGGAAGAGGGACCAGACAATACACAGAAGAAGAAGGGCAACCACCACATCAACCGCTGGAGGATTGCCACCAAACAGGCCGGCTCTGAGGACATAGATGTCACATCTGATGCCTAGAATCCATGTGAACCAGGCCTAAACTCACACACCAGGCCAGAACAAGccctatttatttatgttcacaGCCATGATCATGTTTGAGTTTAAACAGGGCTGCTGAGGACTGTGTACATGCATGTATGTGTCTttgagtgagacagagagagggagtgcaGAAATGTGGTCAGTATGAAGGCAGAGTCTGTTCAACTCTCTGTACATACTACAGTGACTGAAAATCTACTCAGCCGAACCATGATTTGCTCACTTTCTCTACAACACTGGCACTGGCCGAACTGAACATGgcacattgttttatttgttaacaACACTGGCAATTATCAAAtaattgtatttctttttttgttgttctttttattattgtttgtatttgtatCAAAGTCCCAGAATCGAATATGTAAGTTGAATTCTATTCTAAGTTAATGTCATCTTTTTCCAGTCAACTAGCAgctttgtatttatatattaaaaaacacaacactcaTTAAGAATGGTTATAAAGCTTATACTACACTTTTTGTGCTGGTTATGTACAGGTATACATTTTAACGTATTCATGTACACTCAGACCTGAGAACTTTACAATTACCATAAAAGCCCTTGTACAAATGCTAATTTCTCTGTAATTTGATTAAGGTTTTTTTCTGTGGCAGCTGACAACAgtgacaaaataaacaaattatgaTCCAAGGAA

Function

symbol description
emx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within pronephric distal tubule development. Predicted to be active in nucleus. Is expressed in several structures, including forebrain; forebrain neural keel; neural plate; presumptive telencephalon; and pronephros. Orthologous to human EMX1 (empty spiracles homeobox 1).

NR:

description
homeobox protein EMX1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09317 EMX; homeobox protein EMX

RNA

RNA id representative length rna type GC content exon number start site end site
TU297161 False 1229 lncRNA 0.45 4 24683267 24700649
XM_007236424.3 True 1681 mRNA 0.50 3 24683237 24688015

Neighbor

gene id symbol gene type direction distance location
LOC103046721 LOC108441774 coding downstream 79539 24602568 ~ 24603698 (-)
mavs NA coding downstream 105323 24569270 ~ 24577914 (-)
pank2 pank2,LOC107733768,LOC107690147,LOC107708483 coding downstream 117588 24557653 ~ 24565649 (-)
LOC103043058 loxl3b,LOC108441751,LOC108263239,LOC107708481,LOC107678544,LOC107690148,LOC107733697 coding downstream 126297 24531638 ~ 24556940 (-)
LOC103041609 LOC105419135 coding downstream 188198 24474954 ~ 24495039 (-)
LOC103032648 LOC103032648,LOC108441777 coding upstream 9655 24710304 ~ 24711660 (-)
lamtor3 lamtor3 coding upstream 477983 25178632 ~ 25183625 (-)
enpep NA coding upstream 494138 25194787 ~ 25215851 (-)
LOC103045808 LOC103045808,LOC108421350,LOC108263479,LOC107747568,LOC103043775,LOC107666441,LOC107585225,LOC107733735,LOC105896540 coding upstream 540895 25241544 ~ 25249222 (-)
LOC103044566 NA coding upstream 552183 25252832 ~ 25259679 (-)
G218986 LOC108263817 non-coding downstream 25827 24654892 ~ 24657410 (-)
G218930 LOC103042321,LOC108441753 non-coding downstream 100157 24511374 ~ 24583080 (-)
G218938 htra2,LOC108441752,LOC103144266,LOC106918274,LOC105899646,LOC106963707 non-coding downstream 155658 24526264 ~ 24527579 (-)
G218929 NA non-coding downstream 173325 24509645 ~ 24509912 (-)
G218927 NA non-coding downstream 175941 24499673 ~ 24507296 (-)
G219024 NA non-coding upstream 55993 24756642 ~ 24757118 (-)
G219063 NA non-coding upstream 200925 24901574 ~ 24926555 (-)
G219070 NA non-coding upstream 308442 25009091 ~ 25009546 (-)
G219072 NA non-coding upstream 334088 25034737 ~ 25034962 (-)
G219130 NA non-coding upstream 419723 25120372 ~ 25120587 (-)
G218781 NA other downstream 626360 24055525 ~ 24056877 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other downstream 825730 23850963 ~ 23857507 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other downstream 833437 23835779 ~ 23849800 (-)
march8 march8 other downstream 1026251 23454175 ~ 23656986 (-)
G218545 NA other downstream 1837032 22844833 ~ 22846205 (-)
LOC103046115 lrit3 other upstream 517500 25218149 ~ 25226250 (-)
G219510 NA other upstream 1771979 26472628 ~ 26474247 (-)
zbtb18 zbtb18,LOC107666464,LOC107587843 other upstream 2038155 26738804 ~ 26757592 (-)
G219671 NA other upstream 2126379 26827028 ~ 26827527 (-)
epas1 epas1,epas1a,LOC102794480,LOC108430450,LOC107739260 other upstream 3414277 28114926 ~ 28302444 (-)

Expression


Co-expression Network