G219141


Basic Information

Item Value
gene id G219141
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25133953 ~ 25138947 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU297338
TTTTACATGACTGTTCAAGTACAAacgatttaaaaaagaacacattgtGCAGTTAATAGGTCTTATTGGTtcttaatatgtacagtattttaaacacatgtaccactttaaaatcatattcagtgatccccagtctttgTAAAATATTAGCCTGTGACTACTCTGTCAATTAAAAAATCtgacgctttacttcttcatggtgactgctcagaattacccaaaaacaccaaaaaacgcaaaacaacaaccctaaaacatctatttcaccacaaactaacaccccaatacctcagaaaaaatcctccatacataattccttaattattaatcaaatttaaaagttcaactgcaccccaatgcatcatgggtaagctctatgtcacagtatcacatgacactgtgtgggtcagtgtgtgttcctattttatatattaaaaagtacacagtaaatacaaagccgtgccacaaaagaaccaaactacctcactaaagagctcatggaaAACATGTGATTGTAAGTaggatgtatattgtaaaataaataaactttggtaaaagagattaaaaagtgaacagaaaaaaaaaaataataataaattcaacttatttccctgaatacccagtttttcccattagatttcccttgtgtttttgatttcacatattttagacaagtaccagtttcccagtgttcagtactgactacagagccaatacattagagcctgggagacgggggtcttttaaagcatggtccccccacgctttacttcttcatggtgaatGCTCAGAATtaccaaaaaacgcaaaacaacaaccctaaaacatctatttcaccacaaactaacaccccaatacctcagaaaaaatcctccatacataattccttaattattaatcaaatttaaaaattcaactgcaccccaatgcatcatgggaaagctctatgtcacagtatcacatgacactgtgtgggtcagtgtgtgttcctattttatatattaaaaagtac
>TU297340
TTTTACATGACTGTTCAAGTACAAacgatttaaaaaagaacacattgtGCAGTTAATAGGTCTTATTGGTtcttaatatgtacagtattttaaacacatgtaccactttaaaatcatattcagtgatccccagtctttgTAAAATATTAGCCTGTGACTACTCTGTCAATTAAAAAATCtgacgctttacttcttcatggtgactgctcagaattacccaaaaacaccaaaaaacgcaaaacaacaaccctaaaacatctatttcaccacaaactaacaccccaatacctcagaaaaaatcctccatacataattccttaattattaatcaaatttaaaagttcaactgcaccccaatgcatcatgggaaagctctatgtcacagtatcacatgacactgtgtgggtcagtgtgtgttcctattttatatattaaaaagtacacagtaaatacaaagcCGTGCACAAAAGAACCAAACtacctcactaaagagctcatggaaAACATGTGATTGTAAGTaggatgtatattgtaaaataagtaaactttggtaaaagagattaaaaagtgaacagaaaaaaaaaaataataaattccacttatttccctgaatacccagtttttcccattagatttcccttgtgtttttgatttcacatactttagacaagtaccagtttcccagtgttcagtactgactacagagccaatacattagagcctgggagacgggggtcttttaaagcatggtcccccacgctttacttcttcatggtgactgctcagaattacccaaaaacaccaaaaaacgcaaaacaacaaccctaaaacatctatttcaccacaaactaacaccccaatacctcagaaaaaatcctccatacataattccttaattattaatcaaatttaaaagttcaactgcaccccaatgcatcatgggtaagctctatgtcacagtatcacatgacactgtgtgggtcagtgtgtgttcctattttatatattaaaaagtacacagtaaatacaaagccgtgccacaaaagaaccaaactacctcactaaagagctcatggaaAACATGTGATTGTAAGTaggatgtatattgtaaaataaataaactttggtaaaagagattaaaaagtgaacagaaaaaaaaaaataataataaattcaacttatttccctgaatacccagtttttcccattagatttcccttgtgtttttgatttcacatattttagacaagtaccagtttcccagtgttcagtactgactacagagccaatacattagagcctgggagacgggggtcttttaaagcatggtccccccacgctttacttcttcatggtgaatGCTCAGAATtaccaaaaaacaccaaaaaacgcaaaacaacaaccctaaaacatctatttcaccacaaactaacaccccaatactcagaaaaaaatcctccatacataattccttaattattaatcaaatttaaaagttcaactgcaccccaatgcatcatgggtaagctctatgtcacagta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU297338 False 1012 lncRNA 0.34 4 25133953 25138947
TU297340 True 1542 lncRNA 0.35 2 25133953 25136063

Neighbor

gene id symbol gene type direction distance location
ap5s1 ap5s1 coding upstream 335354 24794890 ~ 24798599 (+)
cdc25b cdc25b,LOC108417292 coding upstream 346613 24779609 ~ 24787340 (+)
LOC103045503 sfxn5,sfxn5a,LOC108262907 coding upstream 455840 24658431 ~ 24678113 (+)
LOC103044475 rab11fip5,LOC108263817 coding upstream 476305 24598605 ~ 24657648 (+)
LOC103046402 NA coding upstream 536438 24591088 ~ 24597515 (+)
rrh rrh,LOC107666394,LOC107585226,LOC107733708 coding downstream 45687 25184634 ~ 25192379 (+)
metap1 metap1,LOC107733733,LOC107556924,LOC107695030 coding downstream 87494 25226441 ~ 25241001 (+)
LOC103043156 eif4e,LOC107585229,LOC107747571,LOC108263665,LOC107556921,LOC103460523,LOC103354029 coding downstream 171896 25310843 ~ 25315607 (+)
LOC103042335 lingo2,lingo2b,LOC107666555,LOC107556920 coding downstream 201517 25340464 ~ 25406863 (+)
c25h9orf72 cunh9orf72,zgc:100846,c3h9orf72,LOC107556919,LOC107747573,LOC107733782,LOC107695028 coding downstream 278433 25417380 ~ 25430559 (+)
G219102 NA non-coding upstream 49097 25084457 ~ 25084856 (+)
G219074 NA non-coding upstream 92164 25041237 ~ 25041789 (+)
G219069 NA non-coding upstream 124424 25009141 ~ 25009529 (+)
G219067 NA non-coding upstream 186882 24946724 ~ 24947071 (+)
LOC111196006 NA non-coding upstream 341132 24790077 ~ 24792821 (+)
G219144 lamtor3,mk1i1 non-coding downstream 39706 25178653 ~ 25187678 (+)
G219150 NA non-coding downstream 53961 25192908 ~ 25194235 (+)
G219151 enpep non-coding downstream 55840 25194787 ~ 25198276 (+)
G219153 NA non-coding downstream 65087 25204034 ~ 25208010 (+)
G219154 NA non-coding downstream 70588 25209535 ~ 25215808 (+)
G219050 NA other upstream 291420 24842302 ~ 24842533 (+)
LOC103046104 LOC108441759 other upstream 667086 24443291 ~ 24466867 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 1062327 24064495 ~ 24071626 (+)
G218758 NA other upstream 1070165 24059211 ~ 24063788 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other upstream 1104972 23981135 ~ 24028981 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other downstream 22780 25161727 ~ 25174708 (+)
G219171 cunh4orf32,c3h4orf32 other downstream 118003 25256950 ~ 25302587 (+)
LOC103047652 NA other downstream 299772 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 2061505 27200452 ~ 27236616 (+)
plekhh2 plekhh2 other downstream 3351899 28490846 ~ 28551769 (+)

Expression


Co-expression Network