G219154


Basic Information

Item Value
gene id G219154
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25209535 ~ 25215808 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU297369
atgcgGTCTATTTACATGAGACATCATTCCCAGTGCTGACAGCtgacttctgaggtaaatggaaTGCACTAATAACTAGACATTAGGCCTGGTCTTTAATGAAGTATATGCTTACTAACCTGATGCACAAGCTCATGGGAGATGACACTGGCCACACGTTGCTTGTTGTAAGAGGAAGACTCCTGCTCATCATACAGCAGGTTGGTCTCTCTGTAGGTGACCAGACCCCAGTTCTCCATGGCTCCTGTCCCAAAGTCTGGGATTGCTATCTGATCTGCAGATGGAAATACCATGTCTTATGTGTCACATACTTCAAAGACAATTCTAACTGGTAAAGTTAATTAACAGACCACAACTAATTTAACCAAAATGCAGTCAGGCAAAGTGAACAGAATAGAGAGAGCATTGTAATAAACACTTACCAAGCTTGGGTATGGAGTATTTCATGTCAAAGTACTGTTCAAAATAGTCAAAAATCACTTTAGTGACATTTGCTGCATAATAAGCAGTGTGGATCTGTGAGGGCTGAGCATAGATCCTCAGCTGCAGGTTGAGAGGGGAGAATAAGCAGAGTCTAAGTTAAAGCTTTCCTTCTAATCTACAGCAGAAACATGCATTTAAACAAACACGCTTGGGGAAAATAACTTACTGGAATTCCACTTTCAGAAATCCGCTCAACAAACTCAAAACGATGCACAGCAAAACACACTAAGTAGGTGCTCATCTTGACTGATTTCATAAAAATGGTTTTGACCTTCCCATCAGGAAGGGTCTCTGTTTTCCACTGGCATGTTGGACATTGCTTGGTAGAGCACGTCGTGGGTGATGGAGATGTTGTACGTGGCTTTTTTGTTTGGCTCATCAAAGCAGGGGAAAGATTTACGAGCGTCAGTGGGCTCGTGGTCTGTGGCTGCAATTTTTCTGTCTCTCCTCCCTCCTGGTAGGTTGTCTTGTAGAATCCGACCAGCGAGCCATTGAGCCATCCCTGGAAGTGCAGTGTGAGGGTGTAGTACTCATAAAAATCTGTGGCCTTCAGCTGCTCTGTGGCCTCCACCACCAAATACTCCTGCGGGGTGTATTCAAAGCATCCTTTCACTTCAACAACACGGCTGAATCCATCAAACTCATTGATAGTAAGGGTAGGCACAGCTGTGACGAAGGTCTCTCGGATGTGGAGCCAAATGTGTGTGCTGGGCTTGGTCAGGGTGAACTGAATGGACACTCTGCCAGTGTAGGTGTCCTCGACCATGTCAGGCTCCATGTGCAGGTCATAGTGGAATGGGATGATGTGGTCAGGCAGGCGAAAGTTGGTCCAGTCACCGTTGGTGCTGGTGGAGGGTTTGCAGGGACCCCTATCAGGAGATGTCGTGGGTGTTGGAGTGGTTGTTGATGTGGTTGCTGTCGTCGGGGTCTCCTCGTCTGAGTTGTTCAGGCTCAGGCCCACCCCAAGCCCCACAGCAACACCAGTTACTATGATGACCACACAGATGATAACAGCATGCTTGCCCCGGATACAGTAGcgcttctctttcttctctagGTCAAAACTTTCCATGATGAACAGTCAgaagctctcacacacacatacaaactacCTCCCTTATCTGACTCTTCCAAATACAGCTATACACTCTATAGGAGCACACACTATACCAATAATACCCCTACTATACTTCTTTATTCCTCCCAAGAGAAAACAGCAGCTGCAAATAGATGTTTCAGAGCTGTCCACACTCAAACTCACACTCATTCACCAAAGTCCACCTTCTGTAATTGCATATCACTGCAAAATGGCTCAAAAGTAGTATTATTAACaactaaaaatacatttcagtatTTGCAAACCCAGTTTAGAGGAGTCCGAAACGTCCAATCACAGGAAATCCACTGGTTGATGTTAAGACTAATCTGAGGATTAGTCTTC
>TU297371
atgcgGTCTATTTACATGAGACATCATTCCCAGTGCTGACAGCtgacttctgaggtaaatggaaTGCACTAATAACTAGACATTAGGCCTGGTCTTTAATGAAGTATATGCTTACTAACCTGATGCACAAGCTCATGGGAGATGACACTGGCCACACGTTGCTTGTTGTAAGAGGAAGACTCCTGCTCATCATACAGCAGGTTGGTCTCTCTGTAGGTGACCAGACCCCAGTTCTCCATGGCTCCTGTCCCAAAGTCTGGGATTGCTATCTGATCTGCAGATGGAAATACCATGTCTTATGTGTCACATACTTCAAAGACAATTCTAACTGGTAAAGTTAATTAACAGACCACAACTAATTTAACCAAAATGCAGTCAGGCAAAGTGAACAGAATAGAGAGAGCATTGTAATAAACACTTACCAAGCTTGGGTATGGAGTATTTCATGTCAAAGTACTGTTCAAAATAGTCAAAAATCACTTTAGTGACATTTGCTGCATAATAAGCAGTGTGGATCTGTGAGGGCTGAGCATAGATCCTCAGCTGCAGGTTGAGAGGGGAGAATAAGCAGAGTCTAAGTTAAAGCTTTCCTTCTAATCTACAGCAGAAACATGCATTTAAACAAACACGCTTGGGGAAAATAACTTACTGGAATTCCACTTTCAGAAATCCGCTCAACAAACTCAAAACGATGCACAGCAAAACACACTAAGTAGGTGCTCATCTTGACTGATTTCATAAAAATGGTTTTGACCTTCCCATCAGGAAGGGTCTCTGTTCTCCACTGGCATGTTGGACATTGCTTGGTAGAGCACGTCGTGGGTGATGGAGATGTTGTACGTGGCTTTTTTGTTTGGCTCATCAAAGCAGGGGAAAGATTTACGAGCGTCAGTGGGCTCGTGGTCTGTGGCTGCAATTTTTCTGTCTCTCCTCCCTCCTGGTAGGTTGTCTTGTAGAATCCGACCAGCGAGCCATTGAGCCATCCCTGGAAGTGCAGTGTGAGGGTGTAGTACTCATAAAAATCTGTGGCCTTCAGCTGCTCTGTGGCCTCCACCACCAAATACTCCTGCGGGGTGTATTCAAAGCATCCTTTCACTTCAACAACACGGCTGAATCCATCAAACTCATTGATAGTAAGGGTAGGCACAGCTGTGACGAAGGTCTCTCGGATGTGGAGCCAAATGTGTGTGCTGGGCTTGGTCAGGGTGAACTGAATGGACACTCTGCCAGTGTAGGTGTCCTCGACCATGTCAGGCTCCATGTGCAGGTCATAGTGGAATGGGATGATGTGGTCAGGCAGGCGAAAGTTGGTCCAGTCACCGTTGGTGCTGGTGGAGGGTTTGCAGGGACCCCTATCAGGAGATGTCGTGGGTGTTGGAGTGGTTGTTGATGTGGTTGCTGTCGTCGGGGTCTCCTCGTCTGAGTTGTTCAGGCTCAGGCCCACCCCAAGCCCCACAGCAACACCAGTTACTATGATGACCACACAGATGATAACAGCATGCTTGCCCCGGATACAGTAGcgcttctctttcttctctagGTCAAAACTTTCCATGATGAACAGTCAgaagctctcacacacacatacaaactacCTCCCTTATCTGACTCTTCCAAATACAGCTATACACTCTATAGGAGCACACACTATACCAATAATACCCCTACTATACTTCTTTATTCCTCCCAAGAGAAAACAGCAGCTGCAAATAGATGTTTCAGAGCTGTCCACACTCAAACTCACACTCATTCACCAAAGTCCACCTTCTGTAATTGCATATCACTGCAAAATGGCTCAAAAGTAGTATTATTAACaactaaaaatacatttcagtatTTGCAAACCCAGTTTAGAGGAGTCCGAAACGTCCAATCACAGGAAATCCACTGGTTGATGTTAAGACTAATCTGAGGATTAGTCTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU297369 True 1924 lncRNA 0.45 3 25209535 25215808
TU297371 False 1924 lncRNA 0.45 3 25209535 25215808

Neighbor

gene id symbol gene type direction distance location
rrh rrh,LOC107666394,LOC107585226,LOC107733708 coding upstream 17156 25184634 ~ 25192379 (+)
ap5s1 ap5s1 coding upstream 410936 24794890 ~ 24798599 (+)
cdc25b cdc25b,LOC108417292 coding upstream 422195 24779609 ~ 24787340 (+)
LOC103045503 sfxn5,sfxn5a,LOC108262907 coding upstream 531422 24658431 ~ 24678113 (+)
LOC103044475 rab11fip5,LOC108263817 coding upstream 551887 24598605 ~ 24657648 (+)
metap1 metap1,LOC107733733,LOC107556924,LOC107695030 coding downstream 10633 25226441 ~ 25241001 (+)
LOC103043156 eif4e,LOC107585229,LOC107747571,LOC108263665,LOC107556921,LOC103460523,LOC103354029 coding downstream 95035 25310843 ~ 25315607 (+)
LOC103042335 lingo2,lingo2b,LOC107666555,LOC107556920 coding downstream 124656 25340464 ~ 25406863 (+)
c25h9orf72 cunh9orf72,zgc:100846,c3h9orf72,LOC107556919,LOC107747573,LOC107733782,LOC107695028 coding downstream 201572 25417380 ~ 25430559 (+)
LOC103041526 NA coding downstream 215438 25431246 ~ 25437272 (+)
G219153 NA non-coding upstream 1525 25204034 ~ 25208010 (+)
G219151 enpep non-coding upstream 11259 25194787 ~ 25198276 (+)
G219150 NA non-coding upstream 15300 25192908 ~ 25194235 (+)
G219144 lamtor3,mk1i1 non-coding upstream 21857 25178653 ~ 25187678 (+)
G219141 NA non-coding upstream 70588 25133953 ~ 25138947 (+)
G219155 NA non-coding downstream 1911 25217719 ~ 25218017 (+)
G219162 LOC103045808,LOC108263479,LOC108421350,LOC103044089,LOC107747568,LOC107556900,LOC103043775,LOC107666441 non-coding downstream 28321 25244129 ~ 25245994 (+)
G219167 NA non-coding downstream 36477 25252285 ~ 25252509 (+)
G219173 NA non-coding downstream 48298 25264106 ~ 25268474 (+)
LOC111196010 NA non-coding downstream 173284 25389092 ~ 25389979 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other upstream 34827 25161727 ~ 25174708 (+)
G219050 NA other upstream 367002 24842302 ~ 24842533 (+)
LOC103046104 LOC108441759 other upstream 742668 24443291 ~ 24466867 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 1137909 24064495 ~ 24071626 (+)
G218758 NA other upstream 1145747 24059211 ~ 24063788 (+)
G219171 cunh4orf32,c3h4orf32 other downstream 41142 25256950 ~ 25302587 (+)
LOC103047652 NA other downstream 222911 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 1984644 27200452 ~ 27236616 (+)
plekhh2 plekhh2 other downstream 3275038 28490846 ~ 28551769 (+)
G220074 NA other downstream 3503448 28719256 ~ 28720661 (+)

Expression


Co-expression Network